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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639739_s_at:

>probe:Drosophila_2:1639739_s_at:572:99; Interrogation_Position=1000; Antisense; AGAGATCGACGAGGAACCCAGACCC
>probe:Drosophila_2:1639739_s_at:431:259; Interrogation_Position=1043; Antisense; CAGCATCGGTACCAAGTCCTTAGTT
>probe:Drosophila_2:1639739_s_at:200:309; Interrogation_Position=1054; Antisense; CCAAGTCCTTAGTTCTACACGCGGG
>probe:Drosophila_2:1639739_s_at:545:531; Interrogation_Position=1077; Antisense; GGGTCCATGTGCCTACCATTTACCG
>probe:Drosophila_2:1639739_s_at:221:245; Interrogation_Position=1092; Antisense; CCATTTACCGGCACGAGTTGGGTGT
>probe:Drosophila_2:1639739_s_at:141:723; Interrogation_Position=1109; Antisense; TTGGGTGTGCCTTCCGGCGGCAAAA
>probe:Drosophila_2:1639739_s_at:490:699; Interrogation_Position=1140; Antisense; TTGTTAAGCGAACCGCGAAGCCCGA
>probe:Drosophila_2:1639739_s_at:95:303; Interrogation_Position=1152; Antisense; CCGCGAAGCCCGAACAACATGAGTT
>probe:Drosophila_2:1639739_s_at:317:85; Interrogation_Position=1208; Antisense; AGTGCTGTAGTCAGTCGCAGTCGAT
>probe:Drosophila_2:1639739_s_at:456:309; Interrogation_Position=1407; Antisense; CCACGGGATTGGTTCCTTTTCATGA
>probe:Drosophila_2:1639739_s_at:146:397; Interrogation_Position=1430; Antisense; GAAATTTTCCCGAATGTGAAGTTCA
>probe:Drosophila_2:1639739_s_at:304:613; Interrogation_Position=1446; Antisense; TGAAGTTCAATAGCCCTTGGGACGA
>probe:Drosophila_2:1639739_s_at:359:479; Interrogation_Position=891; Antisense; GTATAAAACAGAATGCCGCTTACAG
>probe:Drosophila_2:1639739_s_at:305:25; Interrogation_Position=942; Antisense; ATATGGCAGCGGGTATGAACGACGT

Paste this into a BLAST search page for me
AGAGATCGACGAGGAACCCAGACCCCAGCATCGGTACCAAGTCCTTAGTTCCAAGTCCTTAGTTCTACACGCGGGGGGTCCATGTGCCTACCATTTACCGCCATTTACCGGCACGAGTTGGGTGTTTGGGTGTGCCTTCCGGCGGCAAAATTGTTAAGCGAACCGCGAAGCCCGACCGCGAAGCCCGAACAACATGAGTTAGTGCTGTAGTCAGTCGCAGTCGATCCACGGGATTGGTTCCTTTTCATGAGAAATTTTCCCGAATGTGAAGTTCATGAAGTTCAATAGCCCTTGGGACGAGTATAAAACAGAATGCCGCTTACAGATATGGCAGCGGGTATGAACGACGT

Full Affymetrix probeset data:

Annotations for 1639739_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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