Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639749_a_at:

>probe:Drosophila_2:1639749_a_at:187:617; Interrogation_Position=3289; Antisense; TGCAACAGCCTTTTGGTGTTCCCCA
>probe:Drosophila_2:1639749_a_at:81:45; Interrogation_Position=3313; Antisense; ATCCTACTGAGCATGGTGGGACCGG
>probe:Drosophila_2:1639749_a_at:211:427; Interrogation_Position=3411; Antisense; GAGATCGGGCAAATCCTATGTGGTG
>probe:Drosophila_2:1639749_a_at:160:277; Interrogation_Position=3426; Antisense; CTATGTGGTGCAGGGATCGCGATCC
>probe:Drosophila_2:1639749_a_at:392:439; Interrogation_Position=3455; Antisense; GAGGCAGCTGCCAGAAGTCGCATCA
>probe:Drosophila_2:1639749_a_at:624:103; Interrogation_Position=3492; Antisense; AGACCTTAATGATCCATCGCTGACG
>probe:Drosophila_2:1639749_a_at:351:609; Interrogation_Position=3512; Antisense; TGACGACGATCACCGAGGAGCCGCA
>probe:Drosophila_2:1639749_a_at:436:87; Interrogation_Position=3536; Antisense; AGTCGTGGAAGTCCAGCAACTCGTC
>probe:Drosophila_2:1639749_a_at:172:505; Interrogation_Position=3558; Antisense; GTCCATCCAGATGCCCAATGATTGG
>probe:Drosophila_2:1639749_a_at:680:603; Interrogation_Position=3576; Antisense; TGATTGGACCTACCAGCCGCGGGAA
>probe:Drosophila_2:1639749_a_at:9:685; Interrogation_Position=3715; Antisense; TATCCGCCGGAGCTGCAGAGCATCG
>probe:Drosophila_2:1639749_a_at:144:141; Interrogation_Position=3757; Antisense; ACGGTGGAGACGACGCACTCGGACA
>probe:Drosophila_2:1639749_a_at:326:399; Interrogation_Position=3798; Antisense; GACGGCCACGGCCAACATCAAGGTG
>probe:Drosophila_2:1639749_a_at:171:525; Interrogation_Position=3842; Antisense; GGGCGGTGCGCAGCTATAACTTTAC

Paste this into a BLAST search page for me
TGCAACAGCCTTTTGGTGTTCCCCAATCCTACTGAGCATGGTGGGACCGGGAGATCGGGCAAATCCTATGTGGTGCTATGTGGTGCAGGGATCGCGATCCGAGGCAGCTGCCAGAAGTCGCATCAAGACCTTAATGATCCATCGCTGACGTGACGACGATCACCGAGGAGCCGCAAGTCGTGGAAGTCCAGCAACTCGTCGTCCATCCAGATGCCCAATGATTGGTGATTGGACCTACCAGCCGCGGGAATATCCGCCGGAGCTGCAGAGCATCGACGGTGGAGACGACGCACTCGGACAGACGGCCACGGCCAACATCAAGGTGGGGCGGTGCGCAGCTATAACTTTAC

Full Affymetrix probeset data:

Annotations for 1639749_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime