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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639783_s_at:

>probe:Drosophila_2:1639783_s_at:92:409; Interrogation_Position=2612; Antisense; GACGGTGGCAATGTATCTGGAGATT
>probe:Drosophila_2:1639783_s_at:541:77; Interrogation_Position=2641; Antisense; AGGATGCGCGAGTGTCCACTTTGAA
>probe:Drosophila_2:1639783_s_at:342:143; Interrogation_Position=2658; Antisense; ACTTTGAAGTTGTGGCTACGGTTGC
>probe:Drosophila_2:1639783_s_at:216:563; Interrogation_Position=2706; Antisense; GGAATCGGGTGTGGTATATAGCCCC
>probe:Drosophila_2:1639783_s_at:173:255; Interrogation_Position=2732; Antisense; CAAAGTCGAACGTTAAGGCGGTGCG
>probe:Drosophila_2:1639783_s_at:698:69; Interrogation_Position=2747; Antisense; AGGCGGTGCGTGGAGCTCAACTTCA
>probe:Drosophila_2:1639783_s_at:19:119; Interrogation_Position=2760; Antisense; AGCTCAACTTCAAGTGATCCACGCC
>probe:Drosophila_2:1639783_s_at:468:299; Interrogation_Position=2781; Antisense; CGCCGGCGACAACTGAAAGAACATC
>probe:Drosophila_2:1639783_s_at:556:151; Interrogation_Position=2801; Antisense; ACATCAATTGAAAAGCTCCGGGCGA
>probe:Drosophila_2:1639783_s_at:520:57; Interrogation_Position=2825; Antisense; ATGGGCGGGTAGCTGTAACAATCTA
>probe:Drosophila_2:1639783_s_at:270:39; Interrogation_Position=2845; Antisense; ATCTAATCCAATCTAAGTACGTGTT
>probe:Drosophila_2:1639783_s_at:687:387; Interrogation_Position=2982; Antisense; GAAAATGCTAATTACGCGCGACAGA
>probe:Drosophila_2:1639783_s_at:86:193; Interrogation_Position=3064; Antisense; AACTATGTGGAACATGTGTCAACGA
>probe:Drosophila_2:1639783_s_at:387:445; Interrogation_Position=3122; Antisense; GATGAAAGGATAGCCGCAAGCAAGC

Paste this into a BLAST search page for me
GACGGTGGCAATGTATCTGGAGATTAGGATGCGCGAGTGTCCACTTTGAAACTTTGAAGTTGTGGCTACGGTTGCGGAATCGGGTGTGGTATATAGCCCCCAAAGTCGAACGTTAAGGCGGTGCGAGGCGGTGCGTGGAGCTCAACTTCAAGCTCAACTTCAAGTGATCCACGCCCGCCGGCGACAACTGAAAGAACATCACATCAATTGAAAAGCTCCGGGCGAATGGGCGGGTAGCTGTAACAATCTAATCTAATCCAATCTAAGTACGTGTTGAAAATGCTAATTACGCGCGACAGAAACTATGTGGAACATGTGTCAACGAGATGAAAGGATAGCCGCAAGCAAGC

Full Affymetrix probeset data:

Annotations for 1639783_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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