FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639804_at:

>probe:Drosophila_2:1639804_at:621:507; Interrogation_Position=1067; Antisense; GTGCTCATACTTGAGGCAGCTTGCT
>probe:Drosophila_2:1639804_at:175:569; Interrogation_Position=1081; Antisense; GGCAGCTTGCTTCATGAACTACTTC
>probe:Drosophila_2:1639804_at:475:279; Interrogation_Position=1099; Antisense; CTACTTCTTTCTGCTGATGTTCAAC
>probe:Drosophila_2:1639804_at:513:441; Interrogation_Position=1114; Antisense; GATGTTCAACGTTTGCCTAGTACCT
>probe:Drosophila_2:1639804_at:630:673; Interrogation_Position=1134; Antisense; TACCTATTATAGCTATCGCGAACGG
>probe:Drosophila_2:1639804_at:331:197; Interrogation_Position=1154; Antisense; AACGGATTCGAGATAGGCTTGGAGC
>probe:Drosophila_2:1639804_at:302:569; Interrogation_Position=1169; Antisense; GGCTTGGAGCATAGGTTTTTAAATT
>probe:Drosophila_2:1639804_at:192:483; Interrogation_Position=1210; Antisense; GTATACAAATGACTCGGATCCCCAA
>probe:Drosophila_2:1639804_at:715:131; Interrogation_Position=1221; Antisense; ACTCGGATCCCCAAAGCATAACTAT
>probe:Drosophila_2:1639804_at:147:443; Interrogation_Position=1258; Antisense; GATGTATTCCTATGTGCTTAGCCAT
>probe:Drosophila_2:1639804_at:208:509; Interrogation_Position=1271; Antisense; GTGCTTAGCCATGCGCTGGGATAAT
>probe:Drosophila_2:1639804_at:618:345; Interrogation_Position=938; Antisense; GCATAAGTTTAAATCGCTGTAAGCA
>probe:Drosophila_2:1639804_at:587:153; Interrogation_Position=967; Antisense; ACAGATGTTCTGGACTTGATGGATC
>probe:Drosophila_2:1639804_at:266:557; Interrogation_Position=978; Antisense; GGACTTGATGGATCCTAACTGGAAA

Paste this into a BLAST search page for me
GTGCTCATACTTGAGGCAGCTTGCTGGCAGCTTGCTTCATGAACTACTTCCTACTTCTTTCTGCTGATGTTCAACGATGTTCAACGTTTGCCTAGTACCTTACCTATTATAGCTATCGCGAACGGAACGGATTCGAGATAGGCTTGGAGCGGCTTGGAGCATAGGTTTTTAAATTGTATACAAATGACTCGGATCCCCAAACTCGGATCCCCAAAGCATAACTATGATGTATTCCTATGTGCTTAGCCATGTGCTTAGCCATGCGCTGGGATAATGCATAAGTTTAAATCGCTGTAAGCAACAGATGTTCTGGACTTGATGGATCGGACTTGATGGATCCTAACTGGAAA

Full Affymetrix probeset data:

Annotations for 1639804_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720