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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639824_at:

>probe:Drosophila_2:1639824_at:595:55; Interrogation_Position=13; Antisense; ATGAAAACAGCTATCATTCTGCTTA
>probe:Drosophila_2:1639824_at:442:181; Interrogation_Position=16; Antisense; AAAACAGCTATCATTCTGCTTATAG
>probe:Drosophila_2:1639824_at:725:685; Interrogation_Position=24; Antisense; TATCATTCTGCTTATAGCCCTTGGG
>probe:Drosophila_2:1639824_at:219:525; Interrogation_Position=48; Antisense; GGGCATGTGCTGCTGAGCCTTCTCC
>probe:Drosophila_2:1639824_at:684:699; Interrogation_Position=67; Antisense; TTCTCCCCGAACTCTAAACTCATTT
>probe:Drosophila_2:1639824_at:216:633; Interrogation_Position=70; Antisense; TCCCCGAACTCTAAACTCATTTTGC
>probe:Drosophila_2:1639824_at:432:279; Interrogation_Position=72; Antisense; CCCGAACTCTAAACTCATTTTGCTC
>probe:Drosophila_2:1639824_at:486:383; Interrogation_Position=75; Antisense; GAACTCTAAACTCATTTTGCTCTTA
>probe:Drosophila_2:1639824_at:540:279; Interrogation_Position=78; Antisense; CTCTAAACTCATTTTGCTCTTACTT
>probe:Drosophila_2:1639824_at:423:177; Interrogation_Position=82; Antisense; AAACTCATTTTGCTCTTACTTAGAC
>probe:Drosophila_2:1639824_at:136:147; Interrogation_Position=84; Antisense; ACTCATTTTGCTCTTACTTAGACGA
>probe:Drosophila_2:1639824_at:594:273; Interrogation_Position=87; Antisense; CATTTTGCTCTTACTTAGACGATGG
>probe:Drosophila_2:1639824_at:48:701; Interrogation_Position=89; Antisense; TTTTGCTCTTACTTAGACGATGGAA
>probe:Drosophila_2:1639824_at:625:337; Interrogation_Position=93; Antisense; GCTCTTACTTAGACGATGGAAAGGA

Paste this into a BLAST search page for me
ATGAAAACAGCTATCATTCTGCTTAAAAACAGCTATCATTCTGCTTATAGTATCATTCTGCTTATAGCCCTTGGGGGGCATGTGCTGCTGAGCCTTCTCCTTCTCCCCGAACTCTAAACTCATTTTCCCCGAACTCTAAACTCATTTTGCCCCGAACTCTAAACTCATTTTGCTCGAACTCTAAACTCATTTTGCTCTTACTCTAAACTCATTTTGCTCTTACTTAAACTCATTTTGCTCTTACTTAGACACTCATTTTGCTCTTACTTAGACGACATTTTGCTCTTACTTAGACGATGGTTTTGCTCTTACTTAGACGATGGAAGCTCTTACTTAGACGATGGAAAGGA

Full Affymetrix probeset data:

Annotations for 1639824_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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