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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639858_s_at:

>probe:Drosophila_2:1639858_s_at:173:103; Interrogation_Position=4063; Antisense; AGAGCCACGCTCGATCAGGATAACG
>probe:Drosophila_2:1639858_s_at:729:251; Interrogation_Position=4116; Antisense; CAAGCTACCGCCGTTGTACATGAAC
>probe:Drosophila_2:1639858_s_at:11:383; Interrogation_Position=4137; Antisense; GAACGCGCTGGACAACCATCTGATA
>probe:Drosophila_2:1639858_s_at:377:285; Interrogation_Position=4156; Antisense; CTGATAGCCACGCTGCATGGCGAAT
>probe:Drosophila_2:1639858_s_at:320:69; Interrogation_Position=4172; Antisense; ATGGCGAATCCTCCGGCATTCAAGA
>probe:Drosophila_2:1639858_s_at:347:213; Interrogation_Position=4193; Antisense; AAGAGCCCATCATTCTAGAGCTGAT
>probe:Drosophila_2:1639858_s_at:643:417; Interrogation_Position=4210; Antisense; GAGCTGATCTTTTACATACTGAACG
>probe:Drosophila_2:1639858_s_at:696:669; Interrogation_Position=4226; Antisense; TACTGAACGCTTGACTTTAGTCCCT
>probe:Drosophila_2:1639858_s_at:202:693; Interrogation_Position=4241; Antisense; TTTAGTCCCTCGTAGTGCAATTCTC
>probe:Drosophila_2:1639858_s_at:523:361; Interrogation_Position=4257; Antisense; GCAATTCTCCCGCTGGATCCGAAGA
>probe:Drosophila_2:1639858_s_at:406:643; Interrogation_Position=4296; Antisense; TCTTAACTCTAAGCTCGACGCGATC
>probe:Drosophila_2:1639858_s_at:309:117; Interrogation_Position=4415; Antisense; AGCTCATCGTTTGGTTTTTGTCTAT
>probe:Drosophila_2:1639858_s_at:339:273; Interrogation_Position=4458; Antisense; CATTTCTAACCTTTCACTTCAACTG
>probe:Drosophila_2:1639858_s_at:403:617; Interrogation_Position=4585; Antisense; TGCTTTACACATTTACCACTCGAGT

Paste this into a BLAST search page for me
AGAGCCACGCTCGATCAGGATAACGCAAGCTACCGCCGTTGTACATGAACGAACGCGCTGGACAACCATCTGATACTGATAGCCACGCTGCATGGCGAATATGGCGAATCCTCCGGCATTCAAGAAAGAGCCCATCATTCTAGAGCTGATGAGCTGATCTTTTACATACTGAACGTACTGAACGCTTGACTTTAGTCCCTTTTAGTCCCTCGTAGTGCAATTCTCGCAATTCTCCCGCTGGATCCGAAGATCTTAACTCTAAGCTCGACGCGATCAGCTCATCGTTTGGTTTTTGTCTATCATTTCTAACCTTTCACTTCAACTGTGCTTTACACATTTACCACTCGAGT

Full Affymetrix probeset data:

Annotations for 1639858_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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