FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639906_a_at:

>probe:Drosophila_2:1639906_a_at:515:553; Interrogation_Position=1537; Antisense; GGACCGATGTACACCCAGGACGAAC
>probe:Drosophila_2:1639906_a_at:692:291; Interrogation_Position=1569; Antisense; GCGCCAAGCGCGTTTAAAGGACCTC
>probe:Drosophila_2:1639906_a_at:351:225; Interrogation_Position=1585; Antisense; AAGGACCTCTACTGGTTCGAATGCT
>probe:Drosophila_2:1639906_a_at:315:233; Interrogation_Position=1604; Antisense; AATGCTCTTGCGATGCCTGTATTGA
>probe:Drosophila_2:1639906_a_at:116:253; Interrogation_Position=1638; Antisense; CAAGTTTGATGATCTGCCTCGGGAT
>probe:Drosophila_2:1639906_a_at:349:529; Interrogation_Position=1658; Antisense; GGGATGTGATTCGTTTCCGCTGCGA
>probe:Drosophila_2:1639906_a_at:581:719; Interrogation_Position=1672; Antisense; TTCCGCTGCGATGCACCGAATAATT
>probe:Drosophila_2:1639906_a_at:447:7; Interrogation_Position=1694; Antisense; ATTGCTCCGCGGTAATTGAAGTGCC
>probe:Drosophila_2:1639906_a_at:506:321; Interrogation_Position=1719; Antisense; GCCCAGCTGCAACGACTTTATGGTC
>probe:Drosophila_2:1639906_a_at:165:495; Interrogation_Position=1741; Antisense; GTCAAGTGTGTCACCTGTGGCGAGA
>probe:Drosophila_2:1639906_a_at:249:673; Interrogation_Position=1803; Antisense; TACCGAGATGATGACGCGCACAGCG
>probe:Drosophila_2:1639906_a_at:630:225; Interrogation_Position=1858; Antisense; AAGGCGCTGGCCAAGTTTGTTGATC
>probe:Drosophila_2:1639906_a_at:26:681; Interrogation_Position=1893; Antisense; TATGTATGAAGTTTTGGCCCCTCCT
>probe:Drosophila_2:1639906_a_at:470:403; Interrogation_Position=1924; Antisense; GACTTCTGCGAGAGCCAACAGCATC

Paste this into a BLAST search page for me
GGACCGATGTACACCCAGGACGAACGCGCCAAGCGCGTTTAAAGGACCTCAAGGACCTCTACTGGTTCGAATGCTAATGCTCTTGCGATGCCTGTATTGACAAGTTTGATGATCTGCCTCGGGATGGGATGTGATTCGTTTCCGCTGCGATTCCGCTGCGATGCACCGAATAATTATTGCTCCGCGGTAATTGAAGTGCCGCCCAGCTGCAACGACTTTATGGTCGTCAAGTGTGTCACCTGTGGCGAGATACCGAGATGATGACGCGCACAGCGAAGGCGCTGGCCAAGTTTGTTGATCTATGTATGAAGTTTTGGCCCCTCCTGACTTCTGCGAGAGCCAACAGCATC

Full Affymetrix probeset data:

Annotations for 1639906_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720