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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639938_at:

>probe:Drosophila_2:1639938_at:42:123; Interrogation_Position=3063; Antisense; AGCCCTTTTACTAGAACTGTCTCTC
>probe:Drosophila_2:1639938_at:198:499; Interrogation_Position=3081; Antisense; GTCTCTCAGCAAGGATCTCTGTGAT
>probe:Drosophila_2:1639938_at:580:389; Interrogation_Position=3139; Antisense; GAAACCCTGCTCTATACGGGAAACT
>probe:Drosophila_2:1639938_at:594:101; Interrogation_Position=3174; Antisense; AGAGCAAGTCTTCCTTATCACAAAG
>probe:Drosophila_2:1639938_at:83:69; Interrogation_Position=3211; Antisense; ATGGCCCTCTTTATGTTTCTTTTCA
>probe:Drosophila_2:1639938_at:547:625; Interrogation_Position=3240; Antisense; TGCCCATTTGGGTCGTATGCAGCAT
>probe:Drosophila_2:1639938_at:29:681; Interrogation_Position=3255; Antisense; TATGCAGCATTCCACGATTACCGAT
>probe:Drosophila_2:1639938_at:641:461; Interrogation_Position=3270; Antisense; GATTACCGATTGTCTGTTGCCAAAA
>probe:Drosophila_2:1639938_at:314:537; Interrogation_Position=3334; Antisense; GGTCTAGTAACGATCTTGCAGCAGT
>probe:Drosophila_2:1639938_at:142:139; Interrogation_Position=3404; Antisense; ACGTGGTGACTGTATCGGAGGCTCA
>probe:Drosophila_2:1639938_at:362:617; Interrogation_Position=3473; Antisense; TGCACTTTCTTCTAGCCTTTATACG
>probe:Drosophila_2:1639938_at:593:699; Interrogation_Position=3490; Antisense; TTTATACGCATTGCTCGTTTGCCAC
>probe:Drosophila_2:1639938_at:404:553; Interrogation_Position=3525; Antisense; GGAGCAGCGCATTCCCAACATAATA
>probe:Drosophila_2:1639938_at:208:489; Interrogation_Position=3558; Antisense; GTACGAGTATTTATCCACACTGCTA

Paste this into a BLAST search page for me
AGCCCTTTTACTAGAACTGTCTCTCGTCTCTCAGCAAGGATCTCTGTGATGAAACCCTGCTCTATACGGGAAACTAGAGCAAGTCTTCCTTATCACAAAGATGGCCCTCTTTATGTTTCTTTTCATGCCCATTTGGGTCGTATGCAGCATTATGCAGCATTCCACGATTACCGATGATTACCGATTGTCTGTTGCCAAAAGGTCTAGTAACGATCTTGCAGCAGTACGTGGTGACTGTATCGGAGGCTCATGCACTTTCTTCTAGCCTTTATACGTTTATACGCATTGCTCGTTTGCCACGGAGCAGCGCATTCCCAACATAATAGTACGAGTATTTATCCACACTGCTA

Full Affymetrix probeset data:

Annotations for 1639938_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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