Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639948_a_at:

>probe:Drosophila_2:1639948_a_at:670:113; Interrogation_Position=1945; Antisense; AGCAGCTGCCCGGATTGTCCAGCAT
>probe:Drosophila_2:1639948_a_at:361:5; Interrogation_Position=1958; Antisense; ATTGTCCAGCATCCAGCATGCCCAG
>probe:Drosophila_2:1639948_a_at:440:83; Interrogation_Position=2053; Antisense; AGGGCCACGGATCCATGCACCAGAA
>probe:Drosophila_2:1639948_a_at:489:53; Interrogation_Position=2067; Antisense; ATGCACCAGAATCACGGCACATCAT
>probe:Drosophila_2:1639948_a_at:474:269; Interrogation_Position=2107; Antisense; CATCGCAGTCCGGTGGCAGCCATGG
>probe:Drosophila_2:1639948_a_at:541:567; Interrogation_Position=2121; Antisense; GGCAGCCATGGGATCGATCATTCGC
>probe:Drosophila_2:1639948_a_at:435:451; Interrogation_Position=2136; Antisense; GATCATTCGCCCATTGATCGCAAGC
>probe:Drosophila_2:1639948_a_at:539:329; Interrogation_Position=2215; Antisense; GCGGTGGATACTACGAGGGACTCAA
>probe:Drosophila_2:1639948_a_at:649:433; Interrogation_Position=2229; Antisense; GAGGGACTCAAGTACGCCAACTAGC
>probe:Drosophila_2:1639948_a_at:239:255; Interrogation_Position=2246; Antisense; CAACTAGCCATCCTCAACTTGGGAT
>probe:Drosophila_2:1639948_a_at:368:629; Interrogation_Position=2256; Antisense; TCCTCAACTTGGGATGGCGTGCATC
>probe:Drosophila_2:1639948_a_at:383:575; Interrogation_Position=2271; Antisense; GGCGTGCATCAATATTACCTCAAAG
>probe:Drosophila_2:1639948_a_at:597:239; Interrogation_Position=2304; Antisense; AATCACGTTTAATTAGGCTCTAAGT
>probe:Drosophila_2:1639948_a_at:694:679; Interrogation_Position=2317; Antisense; TAGGCTCTAAGTAGTGGCACAGTAA

Paste this into a BLAST search page for me
AGCAGCTGCCCGGATTGTCCAGCATATTGTCCAGCATCCAGCATGCCCAGAGGGCCACGGATCCATGCACCAGAAATGCACCAGAATCACGGCACATCATCATCGCAGTCCGGTGGCAGCCATGGGGCAGCCATGGGATCGATCATTCGCGATCATTCGCCCATTGATCGCAAGCGCGGTGGATACTACGAGGGACTCAAGAGGGACTCAAGTACGCCAACTAGCCAACTAGCCATCCTCAACTTGGGATTCCTCAACTTGGGATGGCGTGCATCGGCGTGCATCAATATTACCTCAAAGAATCACGTTTAATTAGGCTCTAAGTTAGGCTCTAAGTAGTGGCACAGTAA

Full Affymetrix probeset data:

Annotations for 1639948_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime