FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1640009_at:

>probe:Drosophila_2:1640009_at:660:293; Interrogation_Position=2655; Antisense; CGACCGAGTGAAGTTCTTGGCGCTT
>probe:Drosophila_2:1640009_at:654:645; Interrogation_Position=2669; Antisense; TCTTGGCGCTTCTCTGCGAGGATGA
>probe:Drosophila_2:1640009_at:701:423; Interrogation_Position=2701; Antisense; GAGACCGCAACAGCTTGTGCCGGAG
>probe:Drosophila_2:1640009_at:604:553; Interrogation_Position=2722; Antisense; GGAGCTCTGGCCATTATTACTTCAG
>probe:Drosophila_2:1640009_at:652:665; Interrogation_Position=2739; Antisense; TACTTCAGTGTCTGTCAAGTGCTGT
>probe:Drosophila_2:1640009_at:291:597; Interrogation_Position=2761; Antisense; TGTGAGAAGATCTTGGCCATCGCCA
>probe:Drosophila_2:1640009_at:432:583; Interrogation_Position=2788; Antisense; TGGCTGGACATTCTGCACACTCTGA
>probe:Drosophila_2:1640009_at:253:289; Interrogation_Position=2828; Antisense; CGGCGGTCCAGCATCGAGGCATTGT
>probe:Drosophila_2:1640009_at:478:557; Interrogation_Position=2910; Antisense; GGACATTATGGAACTGCTGAGCGGT
>probe:Drosophila_2:1640009_at:59:25; Interrogation_Position=3011; Antisense; ATAGGATCATCGAGCGGTCCGACAA
>probe:Drosophila_2:1640009_at:636:391; Interrogation_Position=3040; Antisense; GAAATCCCCGATGTGTTTGCCGAAA
>probe:Drosophila_2:1640009_at:548:325; Interrogation_Position=3097; Antisense; GCGAAATTCGTTTGTAGTGCCTTTT
>probe:Drosophila_2:1640009_at:503:627; Interrogation_Position=3114; Antisense; TGCCTTTTGTTTTTCCTCCATTTCA
>probe:Drosophila_2:1640009_at:526:281; Interrogation_Position=3129; Antisense; CTCCATTTCATCTTCTTTACTTTAC

Paste this into a BLAST search page for me
CGACCGAGTGAAGTTCTTGGCGCTTTCTTGGCGCTTCTCTGCGAGGATGAGAGACCGCAACAGCTTGTGCCGGAGGGAGCTCTGGCCATTATTACTTCAGTACTTCAGTGTCTGTCAAGTGCTGTTGTGAGAAGATCTTGGCCATCGCCATGGCTGGACATTCTGCACACTCTGACGGCGGTCCAGCATCGAGGCATTGTGGACATTATGGAACTGCTGAGCGGTATAGGATCATCGAGCGGTCCGACAAGAAATCCCCGATGTGTTTGCCGAAAGCGAAATTCGTTTGTAGTGCCTTTTTGCCTTTTGTTTTTCCTCCATTTCACTCCATTTCATCTTCTTTACTTTAC

Full Affymetrix probeset data:

Annotations for 1640009_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720