Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1640020_at:

>probe:Drosophila_2:1640020_at:181:419; Interrogation_Position=1798; Antisense; GAGCTGCTGCTCAAGGAGTACTTAT
>probe:Drosophila_2:1640020_at:581:429; Interrogation_Position=1813; Antisense; GAGTACTTATCATCGCGTGACGTAG
>probe:Drosophila_2:1640020_at:523:435; Interrogation_Position=1867; Antisense; GAGGTGCCACACTATCATCACGAGC
>probe:Drosophila_2:1640020_at:20:651; Interrogation_Position=1884; Antisense; TCACGAGCTTGTCTACGAGGCGATT
>probe:Drosophila_2:1640020_at:152:589; Interrogation_Position=1919; Antisense; TGGAGTCACTTAGCCAGACCACCGA
>probe:Drosophila_2:1640020_at:455:77; Interrogation_Position=1943; Antisense; AGGAGGCCATGTGCGAGCTGCTCAA
>probe:Drosophila_2:1640020_at:167:619; Interrogation_Position=1961; Antisense; TGCTCAAGCAGCTAGATCTCACCTG
>probe:Drosophila_2:1640020_at:245:67; Interrogation_Position=2005; Antisense; ATGGAGCAGGGTTTCTTGCGCGCCT
>probe:Drosophila_2:1640020_at:685:295; Interrogation_Position=2034; Antisense; CGACATGGCCGACATCGTTTTGGAT
>probe:Drosophila_2:1640020_at:217:319; Interrogation_Position=2061; Antisense; GCCCCTGGCCTATATAATACTCGAT
>probe:Drosophila_2:1640020_at:676:661; Interrogation_Position=2135; Antisense; TAAACAATGTGCCATCGCGCGGACG
>probe:Drosophila_2:1640020_at:195:289; Interrogation_Position=2154; Antisense; CGGACGCAAGCGTTTCGTTTCGGAG
>probe:Drosophila_2:1640020_at:135:403; Interrogation_Position=2202; Antisense; GACTACCTTCACCATGCGTGATTAA
>probe:Drosophila_2:1640020_at:634:333; Interrogation_Position=2254; Antisense; GCTGCACATGCTTATATGACCACTG

Paste this into a BLAST search page for me
GAGCTGCTGCTCAAGGAGTACTTATGAGTACTTATCATCGCGTGACGTAGGAGGTGCCACACTATCATCACGAGCTCACGAGCTTGTCTACGAGGCGATTTGGAGTCACTTAGCCAGACCACCGAAGGAGGCCATGTGCGAGCTGCTCAATGCTCAAGCAGCTAGATCTCACCTGATGGAGCAGGGTTTCTTGCGCGCCTCGACATGGCCGACATCGTTTTGGATGCCCCTGGCCTATATAATACTCGATTAAACAATGTGCCATCGCGCGGACGCGGACGCAAGCGTTTCGTTTCGGAGGACTACCTTCACCATGCGTGATTAAGCTGCACATGCTTATATGACCACTG

Full Affymetrix probeset data:

Annotations for 1640020_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime