FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1640021_a_at:

>probe:Drosophila_2:1640021_a_at:243:521; Interrogation_Position=1114; Antisense; GTGGCACTGCTGTCCATGATGCTGA
>probe:Drosophila_2:1640021_a_at:13:179; Interrogation_Position=1144; Antisense; AAACTGTACCAGAGACCCATTGAAA
>probe:Drosophila_2:1640021_a_at:549:613; Interrogation_Position=1196; Antisense; TGAACATACTACTCCAGACGCACAA
>probe:Drosophila_2:1640021_a_at:267:249; Interrogation_Position=1224; Antisense; CAGACCCAATTCAGTTTACGGCAGC
>probe:Drosophila_2:1640021_a_at:394:693; Interrogation_Position=1274; Antisense; TTCTGGTGGAGGAATCCCAACACTT
>probe:Drosophila_2:1640021_a_at:641:343; Interrogation_Position=1313; Antisense; GCTTGGATCCAAGTTACGCCTATGT
>probe:Drosophila_2:1640021_a_at:193:375; Interrogation_Position=1401; Antisense; GAAGAAGTTATCCAATCCCGTGGGT
>probe:Drosophila_2:1640021_a_at:121:595; Interrogation_Position=1432; Antisense; TGGGCCGTTCAGGTCATCAAACAAA
>probe:Drosophila_2:1640021_a_at:208:59; Interrogation_Position=1481; Antisense; ATGATCATGTGCAACGCTTCTTTGA
>probe:Drosophila_2:1640021_a_at:352:343; Interrogation_Position=1496; Antisense; GCTTCTTTGAGACCGGCTTGCAAAA
>probe:Drosophila_2:1640021_a_at:655:443; Interrogation_Position=1531; Antisense; GATGATGTCCACGAGTTGGCCGTAA
>probe:Drosophila_2:1640021_a_at:142:91; Interrogation_Position=1544; Antisense; AGTTGGCCGTAAAGGCTGGCTTCCT
>probe:Drosophila_2:1640021_a_at:238:273; Interrogation_Position=1596; Antisense; CATTGAACCACTGCGACTCGAGGAT
>probe:Drosophila_2:1640021_a_at:388:513; Interrogation_Position=1666; Antisense; GTGATCTGTTTCCTGGTCGAGCTGT

Paste this into a BLAST search page for me
GTGGCACTGCTGTCCATGATGCTGAAAACTGTACCAGAGACCCATTGAAATGAACATACTACTCCAGACGCACAACAGACCCAATTCAGTTTACGGCAGCTTCTGGTGGAGGAATCCCAACACTTGCTTGGATCCAAGTTACGCCTATGTGAAGAAGTTATCCAATCCCGTGGGTTGGGCCGTTCAGGTCATCAAACAAAATGATCATGTGCAACGCTTCTTTGAGCTTCTTTGAGACCGGCTTGCAAAAGATGATGTCCACGAGTTGGCCGTAAAGTTGGCCGTAAAGGCTGGCTTCCTCATTGAACCACTGCGACTCGAGGATGTGATCTGTTTCCTGGTCGAGCTGT

Full Affymetrix probeset data:

Annotations for 1640021_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720