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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1640075_a_at:

>probe:Drosophila_2:1640075_a_at:694:491; Interrogation_Position=2245; Antisense; GTAAAGCCTATTTTGCAATCGATCA
>probe:Drosophila_2:1640075_a_at:227:361; Interrogation_Position=2259; Antisense; GCAATCGATCAGTTCCAAATATGTT
>probe:Drosophila_2:1640075_a_at:378:699; Interrogation_Position=2309; Antisense; TTTTTTATACGAAATCTAGCCGAGT
>probe:Drosophila_2:1640075_a_at:574:293; Interrogation_Position=2318; Antisense; CGAAATCTAGCCGAGTAATAAGTTA
>probe:Drosophila_2:1640075_a_at:657:657; Interrogation_Position=2336; Antisense; TAAGTTACATTGAATTGCCCCGATA
>probe:Drosophila_2:1640075_a_at:366:247; Interrogation_Position=2348; Antisense; AATTGCCCCGATATTCACTATGTGT
>probe:Drosophila_2:1640075_a_at:226:151; Interrogation_Position=2375; Antisense; ACATACTTATTTTGTTGCATACATA
>probe:Drosophila_2:1640075_a_at:83:501; Interrogation_Position=2503; Antisense; GTCTGTGCAGACAACGAAGCAGATT
>probe:Drosophila_2:1640075_a_at:658:231; Interrogation_Position=2537; Antisense; AATGATGAAAAGTTCGAGCCGCAGA
>probe:Drosophila_2:1640075_a_at:99:417; Interrogation_Position=2552; Antisense; GAGCCGCAGAATTATCTGTCATCTG
>probe:Drosophila_2:1640075_a_at:126:365; Interrogation_Position=2560; Antisense; GAATTATCTGTCATCTGTATGTAAA
>probe:Drosophila_2:1640075_a_at:479:459; Interrogation_Position=2595; Antisense; GATATATGAACGCAACGAGTACTAA
>probe:Drosophila_2:1640075_a_at:384:431; Interrogation_Position=2611; Antisense; GAGTACTAAGTATATCTGCCCAGAA
>probe:Drosophila_2:1640075_a_at:246:429; Interrogation_Position=2645; Antisense; GAGTTGTCCATATTACATATTCAGA

Paste this into a BLAST search page for me
GTAAAGCCTATTTTGCAATCGATCAGCAATCGATCAGTTCCAAATATGTTTTTTTTATACGAAATCTAGCCGAGTCGAAATCTAGCCGAGTAATAAGTTATAAGTTACATTGAATTGCCCCGATAAATTGCCCCGATATTCACTATGTGTACATACTTATTTTGTTGCATACATAGTCTGTGCAGACAACGAAGCAGATTAATGATGAAAAGTTCGAGCCGCAGAGAGCCGCAGAATTATCTGTCATCTGGAATTATCTGTCATCTGTATGTAAAGATATATGAACGCAACGAGTACTAAGAGTACTAAGTATATCTGCCCAGAAGAGTTGTCCATATTACATATTCAGA

Full Affymetrix probeset data:

Annotations for 1640075_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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