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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1640092_a_at:

>probe:Drosophila_2:1640092_a_at:12:709; Interrogation_Position=7386; Antisense; TTACTCGGGCACTCTGAACTCACCA
>probe:Drosophila_2:1640092_a_at:188:385; Interrogation_Position=7401; Antisense; GAACTCACCACCGATTCCGGATAAT
>probe:Drosophila_2:1640092_a_at:234:43; Interrogation_Position=7424; Antisense; ATCGTCTGAGACGTGTTGCCACAGT
>probe:Drosophila_2:1640092_a_at:60:387; Interrogation_Position=7536; Antisense; GAACATGTCACCAACTGGACAACCA
>probe:Drosophila_2:1640092_a_at:605:585; Interrogation_Position=7551; Antisense; TGGACAACCAGTGCAGCAACAATCG
>probe:Drosophila_2:1640092_a_at:18:187; Interrogation_Position=7568; Antisense; AACAATCGCCGCTAAGAGGACAGGG
>probe:Drosophila_2:1640092_a_at:113:527; Interrogation_Position=7590; Antisense; GGGCAATCAGACTTACTCCTCATAG
>probe:Drosophila_2:1640092_a_at:75:283; Interrogation_Position=7605; Antisense; CTCCTCATAGCACCCACATTGTAAG
>probe:Drosophila_2:1640092_a_at:415:261; Interrogation_Position=7639; Antisense; CAGAATGTCTTCTTGATGGAACTTT
>probe:Drosophila_2:1640092_a_at:247:709; Interrogation_Position=7662; Antisense; TTAAGTGTGCATTCAGCGCAAGCTG
>probe:Drosophila_2:1640092_a_at:61:187; Interrogation_Position=7728; Antisense; AACACATTAGTCTTAGCATCGGGAA
>probe:Drosophila_2:1640092_a_at:190:689; Interrogation_Position=7759; Antisense; TATTTGAATTGTTCGCACACACACA
>probe:Drosophila_2:1640092_a_at:383:423; Interrogation_Position=7876; Antisense; GAGAAATCTATCGTGGGCCTTCGTC
>probe:Drosophila_2:1640092_a_at:25:277; Interrogation_Position=7894; Antisense; CTTCGTCCTCTAACGAGCCAGAAAA

Paste this into a BLAST search page for me
TTACTCGGGCACTCTGAACTCACCAGAACTCACCACCGATTCCGGATAATATCGTCTGAGACGTGTTGCCACAGTGAACATGTCACCAACTGGACAACCATGGACAACCAGTGCAGCAACAATCGAACAATCGCCGCTAAGAGGACAGGGGGGCAATCAGACTTACTCCTCATAGCTCCTCATAGCACCCACATTGTAAGCAGAATGTCTTCTTGATGGAACTTTTTAAGTGTGCATTCAGCGCAAGCTGAACACATTAGTCTTAGCATCGGGAATATTTGAATTGTTCGCACACACACAGAGAAATCTATCGTGGGCCTTCGTCCTTCGTCCTCTAACGAGCCAGAAAA

Full Affymetrix probeset data:

Annotations for 1640092_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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