FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1640131_a_at:

>probe:Drosophila_2:1640131_a_at:665:593; Interrogation_Position=6588; Antisense; TGGGCAGCTTAAATCCGCCTATCTG
>probe:Drosophila_2:1640131_a_at:674:209; Interrogation_Position=6622; Antisense; AAGCACGATCGATTGGCGGATATCC
>probe:Drosophila_2:1640131_a_at:708:543; Interrogation_Position=6639; Antisense; GGATATCCGGCGAATCCTGCGGCAG
>probe:Drosophila_2:1640131_a_at:504:115; Interrogation_Position=6668; Antisense; AGCTTACCGGTCAGGTTCACATCAA
>probe:Drosophila_2:1640131_a_at:91:25; Interrogation_Position=6704; Antisense; ATATGAAGCTCCAGCTAAGCGCCGC
>probe:Drosophila_2:1640131_a_at:429:513; Interrogation_Position=6741; Antisense; GTGATATCCCAACCCTCGAGCAATA
>probe:Drosophila_2:1640131_a_at:91:145; Interrogation_Position=6766; Antisense; ACACATTAGTAACCCCTTGTTTCTG
>probe:Drosophila_2:1640131_a_at:224:479; Interrogation_Position=6784; Antisense; GTTTCTGGGATTTACTAGCTGTGAG
>probe:Drosophila_2:1640131_a_at:452:487; Interrogation_Position=6829; Antisense; GTAGCTTTGAAAACTCCTGCATTCT
>probe:Drosophila_2:1640131_a_at:51:13; Interrogation_Position=6941; Antisense; ATTCACCTAGTGAAGGCCCAAGTTG
>probe:Drosophila_2:1640131_a_at:613:575; Interrogation_Position=6955; Antisense; GGCCCAAGTTGTTTTGTAACTGAGC
>probe:Drosophila_2:1640131_a_at:104:239; Interrogation_Position=7030; Antisense; AATCTTTCCAAAGGGCCAGCAAGTA
>probe:Drosophila_2:1640131_a_at:590:687; Interrogation_Position=7053; Antisense; TATTCCACCCTCCAGCTCAAAAAGA
>probe:Drosophila_2:1640131_a_at:590:145; Interrogation_Position=7077; Antisense; ACTCTCCCAGCATGTAACCAAATTA

Paste this into a BLAST search page for me
TGGGCAGCTTAAATCCGCCTATCTGAAGCACGATCGATTGGCGGATATCCGGATATCCGGCGAATCCTGCGGCAGAGCTTACCGGTCAGGTTCACATCAAATATGAAGCTCCAGCTAAGCGCCGCGTGATATCCCAACCCTCGAGCAATAACACATTAGTAACCCCTTGTTTCTGGTTTCTGGGATTTACTAGCTGTGAGGTAGCTTTGAAAACTCCTGCATTCTATTCACCTAGTGAAGGCCCAAGTTGGGCCCAAGTTGTTTTGTAACTGAGCAATCTTTCCAAAGGGCCAGCAAGTATATTCCACCCTCCAGCTCAAAAAGAACTCTCCCAGCATGTAACCAAATTA

Full Affymetrix probeset data:

Annotations for 1640131_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720