FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1640140_at:

>probe:Drosophila_2:1640140_at:638:685; Interrogation_Position=1352; Antisense; TATACAGCAGAGCAACAGTGCGTAT
>probe:Drosophila_2:1640140_at:440:663; Interrogation_Position=1412; Antisense; TAAACATCACTATTACCAGCATATT
>probe:Drosophila_2:1640140_at:424:451; Interrogation_Position=1439; Antisense; GATCTCGATAAATGACTACTCGTTT
>probe:Drosophila_2:1640140_at:21:655; Interrogation_Position=1464; Antisense; TAATATATTTTATGCCTGGCTTGGC
>probe:Drosophila_2:1640140_at:495:287; Interrogation_Position=1479; Antisense; CTGGCTTGGCATTTCAATCACACAA
>probe:Drosophila_2:1640140_at:366:477; Interrogation_Position=1646; Antisense; GTTTGGTGCCCAACTAAAGAGTTAT
>probe:Drosophila_2:1640140_at:116:259; Interrogation_Position=1745; Antisense; CTTAACATTTTTCAAGCCACCGACG
>probe:Drosophila_2:1640140_at:217:635; Interrogation_Position=1756; Antisense; TCAAGCCACCGACGTTGGTTTAAAG
>probe:Drosophila_2:1640140_at:396:477; Interrogation_Position=1773; Antisense; GTTTAAAGTAGCCATTTCATTGTGA
>probe:Drosophila_2:1640140_at:481:713; Interrogation_Position=1788; Antisense; TTCATTGTGAAATCAGCGAGCTCAT
>probe:Drosophila_2:1640140_at:698:417; Interrogation_Position=1805; Antisense; GAGCTCATTGAGTGAATCGTTTTAT
>probe:Drosophila_2:1640140_at:474:405; Interrogation_Position=1830; Antisense; GACTGAGTTGTTCGCAACCCATAAT
>probe:Drosophila_2:1640140_at:483:243; Interrogation_Position=1872; Antisense; AATATTCATGACACGTGCCGATTGC
>probe:Drosophila_2:1640140_at:151:399; Interrogation_Position=1881; Antisense; GACACGTGCCGATTGCGTATATGAA

Paste this into a BLAST search page for me
TATACAGCAGAGCAACAGTGCGTATTAAACATCACTATTACCAGCATATTGATCTCGATAAATGACTACTCGTTTTAATATATTTTATGCCTGGCTTGGCCTGGCTTGGCATTTCAATCACACAAGTTTGGTGCCCAACTAAAGAGTTATCTTAACATTTTTCAAGCCACCGACGTCAAGCCACCGACGTTGGTTTAAAGGTTTAAAGTAGCCATTTCATTGTGATTCATTGTGAAATCAGCGAGCTCATGAGCTCATTGAGTGAATCGTTTTATGACTGAGTTGTTCGCAACCCATAATAATATTCATGACACGTGCCGATTGCGACACGTGCCGATTGCGTATATGAA

Full Affymetrix probeset data:

Annotations for 1640140_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720