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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1640167_s_at:

>probe:Drosophila_2:1640167_s_at:515:675; Interrogation_Position=7108; Antisense; TAGCATATTAACTTATGGCAGCACT
>probe:Drosophila_2:1640167_s_at:164:189; Interrogation_Position=7117; Antisense; AACTTATGGCAGCACTTTGTTGCTA
>probe:Drosophila_2:1640167_s_at:707:67; Interrogation_Position=7122; Antisense; ATGGCAGCACTTTGTTGCTATGTTT
>probe:Drosophila_2:1640167_s_at:621:351; Interrogation_Position=7125; Antisense; GCAGCACTTTGTTGCTATGTTTATG
>probe:Drosophila_2:1640167_s_at:576:31; Interrogation_Position=7250; Antisense; ATAAGTGCATGGTCAGCATTCACAC
>probe:Drosophila_2:1640167_s_at:169:617; Interrogation_Position=7255; Antisense; TGCATGGTCAGCATTCACACGCCGA
>probe:Drosophila_2:1640167_s_at:631:649; Interrogation_Position=7262; Antisense; TCAGCATTCACACGCCGACCAAATA
>probe:Drosophila_2:1640167_s_at:232:317; Interrogation_Position=7275; Antisense; GCCGACCAAATACATATTACATACG
>probe:Drosophila_2:1640167_s_at:143:669; Interrogation_Position=7296; Antisense; TACGTACATACATATCTCGCTCTCC
>probe:Drosophila_2:1640167_s_at:37:31; Interrogation_Position=7303; Antisense; ATACATATCTCGCTCTCCCGATAAG
>probe:Drosophila_2:1640167_s_at:30:635; Interrogation_Position=7312; Antisense; TCGCTCTCCCGATAAGCCTAGATAT
>probe:Drosophila_2:1640167_s_at:329:337; Interrogation_Position=7314; Antisense; GCTCTCCCGATAAGCCTAGATATAT
>probe:Drosophila_2:1640167_s_at:213:281; Interrogation_Position=7317; Antisense; CTCCCGATAAGCCTAGATATATAAG
>probe:Drosophila_2:1640167_s_at:450:473; Interrogation_Position=7446; Antisense; GTAGACGTTGAGCTGACAGAACCAT

Paste this into a BLAST search page for me
TAGCATATTAACTTATGGCAGCACTAACTTATGGCAGCACTTTGTTGCTAATGGCAGCACTTTGTTGCTATGTTTGCAGCACTTTGTTGCTATGTTTATGATAAGTGCATGGTCAGCATTCACACTGCATGGTCAGCATTCACACGCCGATCAGCATTCACACGCCGACCAAATAGCCGACCAAATACATATTACATACGTACGTACATACATATCTCGCTCTCCATACATATCTCGCTCTCCCGATAAGTCGCTCTCCCGATAAGCCTAGATATGCTCTCCCGATAAGCCTAGATATATCTCCCGATAAGCCTAGATATATAAGGTAGACGTTGAGCTGACAGAACCAT

Full Affymetrix probeset data:

Annotations for 1640167_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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