FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1640175_at:

>probe:Drosophila_2:1640175_at:713:493; Interrogation_Position=109; Antisense; GTCAAAAGACGCCTGCAGCATATGC
>probe:Drosophila_2:1640175_at:135:25; Interrogation_Position=128; Antisense; ATATGCGACAAAGTGGGCCTCAAGC
>probe:Drosophila_2:1640175_at:355:307; Interrogation_Position=153; Antisense; CCTTCACCCGGGATAATGTGTTCAA
>probe:Drosophila_2:1640175_at:354:603; Interrogation_Position=171; Antisense; TGTTCAACTACTACATACCGCTGCA
>probe:Drosophila_2:1640175_at:9:555; Interrogation_Position=212; Antisense; GGAGCCCTTGCGGTGAATGTTATGA
>probe:Drosophila_2:1640175_at:262:103; Interrogation_Position=267; Antisense; AGAAGGACCTGACGAACGTGTTCCT
>probe:Drosophila_2:1640175_at:588:593; Interrogation_Position=306; Antisense; TGGGCAGTGCCTTCTACATTTACGG
>probe:Drosophila_2:1640175_at:684:69; Interrogation_Position=332; Antisense; AGGCCCCACCTGAAGGACGTGAAGA
>probe:Drosophila_2:1640175_at:75:159; Interrogation_Position=357; Antisense; ACAACAAGCGAGGTGCGTACGCCCT
>probe:Drosophila_2:1640175_at:669:689; Interrogation_Position=396; Antisense; TATTCTCCATGGGATCCGTTCTGGC
>probe:Drosophila_2:1640175_at:565:153; Interrogation_Position=448; Antisense; ACAGGACAATGCACTGCTGGCGACC
>probe:Drosophila_2:1640175_at:688:313; Interrogation_Position=497; Antisense; GCCATCGTGAAGGTCGGCACTGATT
>probe:Drosophila_2:1640175_at:90:489; Interrogation_Position=611; Antisense; GTACTGTAATTGCTGTCTTGGCCGT
>probe:Drosophila_2:1640175_at:244:497; Interrogation_Position=625; Antisense; GTCTTGGCCGTACATAGCTCGTAAT

Paste this into a BLAST search page for me
GTCAAAAGACGCCTGCAGCATATGCATATGCGACAAAGTGGGCCTCAAGCCCTTCACCCGGGATAATGTGTTCAATGTTCAACTACTACATACCGCTGCAGGAGCCCTTGCGGTGAATGTTATGAAGAAGGACCTGACGAACGTGTTCCTTGGGCAGTGCCTTCTACATTTACGGAGGCCCCACCTGAAGGACGTGAAGAACAACAAGCGAGGTGCGTACGCCCTTATTCTCCATGGGATCCGTTCTGGCACAGGACAATGCACTGCTGGCGACCGCCATCGTGAAGGTCGGCACTGATTGTACTGTAATTGCTGTCTTGGCCGTGTCTTGGCCGTACATAGCTCGTAAT

Full Affymetrix probeset data:

Annotations for 1640175_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720