FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1640224_s_at:

>probe:Drosophila_2:1640224_s_at:30:59; Interrogation_Position=1596; Antisense; ATGATGTCCGTTATTACTGCCTTGT
>probe:Drosophila_2:1640224_s_at:640:285; Interrogation_Position=1656; Antisense; CTGGTAATTTCATCGCTAGTCTTCT
>probe:Drosophila_2:1640224_s_at:671:265; Interrogation_Position=1713; Antisense; CAGTTGGGCTTTAGTCAGCTGACTC
>probe:Drosophila_2:1640224_s_at:26:119; Interrogation_Position=1729; Antisense; AGCTGACTCAGCTGCCAAATTTGGC
>probe:Drosophila_2:1640224_s_at:503:665; Interrogation_Position=1760; Antisense; TACACACTTGCTTATTTCGGGAATC
>probe:Drosophila_2:1640224_s_at:83:369; Interrogation_Position=1780; Antisense; GAATCCTTGTGCTGATGACCACTTG
>probe:Drosophila_2:1640224_s_at:648:145; Interrogation_Position=1799; Antisense; CACTTGGGTTTATGGACGCGTTCGT
>probe:Drosophila_2:1640224_s_at:399:479; Interrogation_Position=1822; Antisense; GTTTCCAGTGCGACTTGCAGTTTAT
>probe:Drosophila_2:1640224_s_at:279:17; Interrogation_Position=1875; Antisense; ATTTTCTTTATACGCTTTGCCACGC
>probe:Drosophila_2:1640224_s_at:345:593; Interrogation_Position=1909; Antisense; TGGGACTGTGTCTGTTTCAACTAAC
>probe:Drosophila_2:1640224_s_at:33:513; Interrogation_Position=1977; Antisense; GTGAGTCAGGGCTTGATTCTCCTAA
>probe:Drosophila_2:1640224_s_at:290:605; Interrogation_Position=1990; Antisense; TGATTCTCCTAACGGCCATATCTTA
>probe:Drosophila_2:1640224_s_at:469:727; Interrogation_Position=2048; Antisense; TTGGCGCCAGCGATTGCAACAGTGC
>probe:Drosophila_2:1640224_s_at:235:559; Interrogation_Position=2105; Antisense; GGACAACCGGCGATTCTACGAGGAA

Paste this into a BLAST search page for me
ATGATGTCCGTTATTACTGCCTTGTCTGGTAATTTCATCGCTAGTCTTCTCAGTTGGGCTTTAGTCAGCTGACTCAGCTGACTCAGCTGCCAAATTTGGCTACACACTTGCTTATTTCGGGAATCGAATCCTTGTGCTGATGACCACTTGCACTTGGGTTTATGGACGCGTTCGTGTTTCCAGTGCGACTTGCAGTTTATATTTTCTTTATACGCTTTGCCACGCTGGGACTGTGTCTGTTTCAACTAACGTGAGTCAGGGCTTGATTCTCCTAATGATTCTCCTAACGGCCATATCTTATTGGCGCCAGCGATTGCAACAGTGCGGACAACCGGCGATTCTACGAGGAA

Full Affymetrix probeset data:

Annotations for 1640224_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720