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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1640236_at:

>probe:Drosophila_2:1640236_at:693:437; Interrogation_Position=106; Antisense; GAGGACTGCCTAGACCACTGGAGAA
>probe:Drosophila_2:1640236_at:293:63; Interrogation_Position=13; Antisense; ATGGGCCGTAACAACGTCATCTGCA
>probe:Drosophila_2:1640236_at:648:239; Interrogation_Position=134; Antisense; AATCAAGGACTTGCCCTATCTGCCG
>probe:Drosophila_2:1640236_at:616:313; Interrogation_Position=172; Antisense; GCCTACTTTCAGCTTTATCTGGACT
>probe:Drosophila_2:1640236_at:390:479; Interrogation_Position=204; Antisense; GTTTCCGGAAAGTGCATCGGCTCAG
>probe:Drosophila_2:1640236_at:502:41; Interrogation_Position=251; Antisense; ATCGGAGCCAAGGTCACAGCAGCAG
>probe:Drosophila_2:1640236_at:216:39; Interrogation_Position=31; Antisense; ATCTGCACGATCTGCTCGGAGCGGT
>probe:Drosophila_2:1640236_at:127:255; Interrogation_Position=315; Antisense; CAACAGCAGCAGTGACGATTATATT
>probe:Drosophila_2:1640236_at:683:237; Interrogation_Position=361; Antisense; AATCTACTTTACGAGACGGGCGTGT
>probe:Drosophila_2:1640236_at:496:23; Interrogation_Position=402; Antisense; ATATCTTAACCAGCGGATCGGAGCC
>probe:Drosophila_2:1640236_at:40:277; Interrogation_Position=427; Antisense; CTTACTGTCCTCAATGCTGAACTCA
>probe:Drosophila_2:1640236_at:458:539; Interrogation_Position=53; Antisense; GGTTTCGCACCTCGGACAATATACA
>probe:Drosophila_2:1640236_at:319:687; Interrogation_Position=72; Antisense; TATACAAGCCGGCAGCTGCGGACAC
>probe:Drosophila_2:1640236_at:234:621; Interrogation_Position=88; Antisense; TGCGGACACGCGTTCCACGAGGACT

Paste this into a BLAST search page for me
GAGGACTGCCTAGACCACTGGAGAAATGGGCCGTAACAACGTCATCTGCAAATCAAGGACTTGCCCTATCTGCCGGCCTACTTTCAGCTTTATCTGGACTGTTTCCGGAAAGTGCATCGGCTCAGATCGGAGCCAAGGTCACAGCAGCAGATCTGCACGATCTGCTCGGAGCGGTCAACAGCAGCAGTGACGATTATATTAATCTACTTTACGAGACGGGCGTGTATATCTTAACCAGCGGATCGGAGCCCTTACTGTCCTCAATGCTGAACTCAGGTTTCGCACCTCGGACAATATACATATACAAGCCGGCAGCTGCGGACACTGCGGACACGCGTTCCACGAGGACT

Full Affymetrix probeset data:

Annotations for 1640236_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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