Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1640237_a_at:

>probe:Drosophila_2:1640237_a_at:335:539; Interrogation_Position=3572; Antisense; GGATTGAATCGGTTTCCTATGACAA
>probe:Drosophila_2:1640237_a_at:381:311; Interrogation_Position=3600; Antisense; GCCAAATCGCAATGTTGTTGCCACG
>probe:Drosophila_2:1640237_a_at:413:469; Interrogation_Position=3616; Antisense; GTTGCCACGGCCCATAAGGATAGGT
>probe:Drosophila_2:1640237_a_at:641:611; Interrogation_Position=3630; Antisense; TAAGGATAGGTGCTGGTTCCCCGCC
>probe:Drosophila_2:1640237_a_at:165:221; Interrogation_Position=3668; Antisense; AAGTGCTGGCTCGTGAGTCCGGACA
>probe:Drosophila_2:1640237_a_at:282:631; Interrogation_Position=3701; Antisense; TCCCGGTGCCCAGTAACAATGCTTG
>probe:Drosophila_2:1640237_a_at:666:453; Interrogation_Position=3741; Antisense; GATCAAATCCGTGTGGTATACAGAG
>probe:Drosophila_2:1640237_a_at:111:685; Interrogation_Position=3776; Antisense; TATTAAATCGTTGGCGCTGGAAAAT
>probe:Drosophila_2:1640237_a_at:419:185; Interrogation_Position=3875; Antisense; AAAATTTTGTGGATGCGCTGCGAGG
>probe:Drosophila_2:1640237_a_at:273:107; Interrogation_Position=3907; Antisense; AGAAGGATAATTGCCGTTACCACGT
>probe:Drosophila_2:1640237_a_at:475:57; Interrogation_Position=3953; Antisense; ATGTTAGTTGAACCCTAGAATGCTA
>probe:Drosophila_2:1640237_a_at:622:473; Interrogation_Position=4038; Antisense; GTTAACCAATCTGTTGTACGATGAA
>probe:Drosophila_2:1640237_a_at:667:173; Interrogation_Position=4071; Antisense; AAAGCGAAACCTTCTGGCCACGTTG
>probe:Drosophila_2:1640237_a_at:321:641; Interrogation_Position=4083; Antisense; TCTGGCCACGTTGCATCTAAATACA

Paste this into a BLAST search page for me
GGATTGAATCGGTTTCCTATGACAAGCCAAATCGCAATGTTGTTGCCACGGTTGCCACGGCCCATAAGGATAGGTTAAGGATAGGTGCTGGTTCCCCGCCAAGTGCTGGCTCGTGAGTCCGGACATCCCGGTGCCCAGTAACAATGCTTGGATCAAATCCGTGTGGTATACAGAGTATTAAATCGTTGGCGCTGGAAAATAAAATTTTGTGGATGCGCTGCGAGGAGAAGGATAATTGCCGTTACCACGTATGTTAGTTGAACCCTAGAATGCTAGTTAACCAATCTGTTGTACGATGAAAAAGCGAAACCTTCTGGCCACGTTGTCTGGCCACGTTGCATCTAAATACA

Full Affymetrix probeset data:

Annotations for 1640237_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime