FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1640240_s_at:

>probe:Drosophila_2:1640240_s_at:640:69; Interrogation_Position=3539; Antisense; AGGCCTATCTGCTTTTCTACGAACG
>probe:Drosophila_2:1640240_s_at:78:669; Interrogation_Position=3556; Antisense; TACGAACGCATATACTAGGGATTAG
>probe:Drosophila_2:1640240_s_at:103:461; Interrogation_Position=3575; Antisense; GATTAGCTCGAGCTTTAAGCGGAAC
>probe:Drosophila_2:1640240_s_at:20:21; Interrogation_Position=3641; Antisense; ATTTGATACAGACAGAGTGCCGGAG
>probe:Drosophila_2:1640240_s_at:540:95; Interrogation_Position=3677; Antisense; AGATACTCACACATGCCAAATGCAT
>probe:Drosophila_2:1640240_s_at:454:167; Interrogation_Position=3694; Antisense; AAATGCATTTGGTTTCTCCCACTCA
>probe:Drosophila_2:1640240_s_at:108:539; Interrogation_Position=3704; Antisense; GGTTTCTCCCACTCAAAATTAATTG
>probe:Drosophila_2:1640240_s_at:429:247; Interrogation_Position=3724; Antisense; AATTGTACACTTTCGCTATTTTTAT
>probe:Drosophila_2:1640240_s_at:676:485; Interrogation_Position=3804; Antisense; GTAGACACACGCACTCATGTTAAAT
>probe:Drosophila_2:1640240_s_at:34:3; Interrogation_Position=3827; Antisense; ATTGTAGTTCTCAGGAGGTTTGCTA
>probe:Drosophila_2:1640240_s_at:514:539; Interrogation_Position=3843; Antisense; GGTTTGCTATTATGTCCTCGATTTA
>probe:Drosophila_2:1640240_s_at:126:691; Interrogation_Position=3940; Antisense; TTTGTTACCAAAATTGCCCATTATG
>probe:Drosophila_2:1640240_s_at:140:471; Interrogation_Position=3972; Antisense; GTTACTTAAACATACTCGAGTTGGG
>probe:Drosophila_2:1640240_s_at:200:401; Interrogation_Position=4024; Antisense; GACAGACCGCAGAATGGATAGCTAA

Paste this into a BLAST search page for me
AGGCCTATCTGCTTTTCTACGAACGTACGAACGCATATACTAGGGATTAGGATTAGCTCGAGCTTTAAGCGGAACATTTGATACAGACAGAGTGCCGGAGAGATACTCACACATGCCAAATGCATAAATGCATTTGGTTTCTCCCACTCAGGTTTCTCCCACTCAAAATTAATTGAATTGTACACTTTCGCTATTTTTATGTAGACACACGCACTCATGTTAAATATTGTAGTTCTCAGGAGGTTTGCTAGGTTTGCTATTATGTCCTCGATTTATTTGTTACCAAAATTGCCCATTATGGTTACTTAAACATACTCGAGTTGGGGACAGACCGCAGAATGGATAGCTAA

Full Affymetrix probeset data:

Annotations for 1640240_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720