FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1640377_s_at:

>probe:Drosophila_2:1640377_s_at:669:231; Interrogation_Position=1545; Antisense; AATGCAAACCACACAAACCAACAAG
>probe:Drosophila_2:1640377_s_at:128:393; Interrogation_Position=1569; Antisense; GAAACCACACAGAAAAGCTTTTTAT
>probe:Drosophila_2:1640377_s_at:23:167; Interrogation_Position=1646; Antisense; AAATCCTAGCGAAGAAACAACAGAG
>probe:Drosophila_2:1640377_s_at:300:229; Interrogation_Position=1832; Antisense; AATGGTACACACTAATGTTTCTGAC
>probe:Drosophila_2:1640377_s_at:241:231; Interrogation_Position=1845; Antisense; AATGTTTCTGACAAGCTTTGGAGAC
>probe:Drosophila_2:1640377_s_at:726:251; Interrogation_Position=1856; Antisense; CAAGCTTTGGAGACTTTCCGTTACA
>probe:Drosophila_2:1640377_s_at:120:425; Interrogation_Position=1865; Antisense; GAGACTTTCCGTTACAAATAGTTAT
>probe:Drosophila_2:1640377_s_at:71:679; Interrogation_Position=1883; Antisense; TAGTTATTTTCTTTGCCCTGGAACA
>probe:Drosophila_2:1640377_s_at:446:275; Interrogation_Position=1893; Antisense; CTTTGCCCTGGAACACATCCAATAT
>probe:Drosophila_2:1640377_s_at:125:485; Interrogation_Position=1938; Antisense; GTATGTTTAGCAATTACTCCCGATT
>probe:Drosophila_2:1640377_s_at:430:669; Interrogation_Position=1952; Antisense; TACTCCCGATTGATTTGCTTCTTTG
>probe:Drosophila_2:1640377_s_at:529:601; Interrogation_Position=1962; Antisense; TGATTTGCTTCTTTGTTTACTTTTG
>probe:Drosophila_2:1640377_s_at:79:699; Interrogation_Position=1977; Antisense; TTTACTTTTGTATAACTGCATTCTG
>probe:Drosophila_2:1640377_s_at:237:483; Interrogation_Position=1986; Antisense; GTATAACTGCATTCTGTATTGTAAT

Paste this into a BLAST search page for me
AATGCAAACCACACAAACCAACAAGGAAACCACACAGAAAAGCTTTTTATAAATCCTAGCGAAGAAACAACAGAGAATGGTACACACTAATGTTTCTGACAATGTTTCTGACAAGCTTTGGAGACCAAGCTTTGGAGACTTTCCGTTACAGAGACTTTCCGTTACAAATAGTTATTAGTTATTTTCTTTGCCCTGGAACACTTTGCCCTGGAACACATCCAATATGTATGTTTAGCAATTACTCCCGATTTACTCCCGATTGATTTGCTTCTTTGTGATTTGCTTCTTTGTTTACTTTTGTTTACTTTTGTATAACTGCATTCTGGTATAACTGCATTCTGTATTGTAAT

Full Affymetrix probeset data:

Annotations for 1640377_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720