FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1640429_a_at:

>probe:Drosophila_2:1640429_a_at:344:163; Interrogation_Position=1659; Antisense; AAATCTCCGATTGGTTTGACTCCCT
>probe:Drosophila_2:1640429_a_at:85:81; Interrogation_Position=1689; Antisense; AGGGTCTGCACTGGAATGTCCGCAA
>probe:Drosophila_2:1640429_a_at:535:371; Interrogation_Position=1720; Antisense; GAAGTGCCTTGATGAGCTGTCGGAC
>probe:Drosophila_2:1640429_a_at:241:119; Interrogation_Position=1734; Antisense; AGCTGTCGGACTTGACCACTTCGGG
>probe:Drosophila_2:1640429_a_at:412:559; Interrogation_Position=1765; Antisense; GGACACGCTCGATGACTTTGACAAT
>probe:Drosophila_2:1640429_a_at:691:395; Interrogation_Position=1784; Antisense; GACAATCTTCAGATCTACGATGCGT
>probe:Drosophila_2:1640429_a_at:10:241; Interrogation_Position=1825; Antisense; AATCACTGTTTGTTAGCGTGGCCAA
>probe:Drosophila_2:1640429_a_at:172:29; Interrogation_Position=1943; Antisense; ATACACTTTAAGTCGCTTGGTTGAA
>probe:Drosophila_2:1640429_a_at:45:465; Interrogation_Position=1984; Antisense; GATTCCGATCGCAATGTTTGCTTAA
>probe:Drosophila_2:1640429_a_at:63:479; Interrogation_Position=1999; Antisense; GTTTGCTTAAGCTAGACCTATTCTG
>probe:Drosophila_2:1640429_a_at:674:413; Interrogation_Position=2013; Antisense; GACCTATTCTGTTGATTCTTGTGAA
>probe:Drosophila_2:1640429_a_at:287:659; Interrogation_Position=2051; Antisense; TACAGCTTACGCTTAGCTCTTAAGT
>probe:Drosophila_2:1640429_a_at:231:247; Interrogation_Position=2101; Antisense; AATTGCGTCGAGTGCTAAGTACTTA
>probe:Drosophila_2:1640429_a_at:506:207; Interrogation_Position=2125; Antisense; AAGCTGACTCGCGTTATCTGTACAA

Paste this into a BLAST search page for me
AAATCTCCGATTGGTTTGACTCCCTAGGGTCTGCACTGGAATGTCCGCAAGAAGTGCCTTGATGAGCTGTCGGACAGCTGTCGGACTTGACCACTTCGGGGGACACGCTCGATGACTTTGACAATGACAATCTTCAGATCTACGATGCGTAATCACTGTTTGTTAGCGTGGCCAAATACACTTTAAGTCGCTTGGTTGAAGATTCCGATCGCAATGTTTGCTTAAGTTTGCTTAAGCTAGACCTATTCTGGACCTATTCTGTTGATTCTTGTGAATACAGCTTACGCTTAGCTCTTAAGTAATTGCGTCGAGTGCTAAGTACTTAAAGCTGACTCGCGTTATCTGTACAA

Full Affymetrix probeset data:

Annotations for 1640429_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720