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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1640430_s_at:

>probe:Drosophila_2:1640430_s_at:443:687; Interrogation_Position=1178; Antisense; TATATGCACTAAATGCCCTGCCAAC
>probe:Drosophila_2:1640430_s_at:626:49; Interrogation_Position=1190; Antisense; ATGCCCTGCCAACGGAGTCGTTTAA
>probe:Drosophila_2:1640430_s_at:682:611; Interrogation_Position=1230; Antisense; TGAAAGCACCTGTCGCGATCTGTAC
>probe:Drosophila_2:1640430_s_at:555:451; Interrogation_Position=1246; Antisense; GATCTGTACGCGAAGCTCCAGGAGT
>probe:Drosophila_2:1640430_s_at:216:77; Interrogation_Position=1265; Antisense; AGGAGTCACACTTGGCCAGGCAAGA
>probe:Drosophila_2:1640430_s_at:143:351; Interrogation_Position=1298; Antisense; GCAGTTGCATAACAATTTCGGCTAG
>probe:Drosophila_2:1640430_s_at:584:453; Interrogation_Position=1378; Antisense; GATAACCAGTTTAGGGCGGAGCAGC
>probe:Drosophila_2:1640430_s_at:49:361; Interrogation_Position=1403; Antisense; GCAAGCTGCGGGTTCTCCAGGCCGA
>probe:Drosophila_2:1640430_s_at:492:629; Interrogation_Position=1418; Antisense; TCCAGGCCGAGCTCAATGTCGAGGA
>probe:Drosophila_2:1640430_s_at:499:97; Interrogation_Position=1452; Antisense; AGATCGTTCCTACAAGACCTTCAAT
>probe:Drosophila_2:1640430_s_at:265:651; Interrogation_Position=1472; Antisense; TCAATGAACGATGCCGGTCCTATTT
>probe:Drosophila_2:1640430_s_at:120:537; Interrogation_Position=1487; Antisense; GGTCCTATTTTCATGCTGGCCAATA
>probe:Drosophila_2:1640430_s_at:33:219; Interrogation_Position=1557; Antisense; AAGTCTCATGGAACTGCCAAGCCAG
>probe:Drosophila_2:1640430_s_at:465:569; Interrogation_Position=1584; Antisense; GGCATTTACATGCACTCCGTTGTAT

Paste this into a BLAST search page for me
TATATGCACTAAATGCCCTGCCAACATGCCCTGCCAACGGAGTCGTTTAATGAAAGCACCTGTCGCGATCTGTACGATCTGTACGCGAAGCTCCAGGAGTAGGAGTCACACTTGGCCAGGCAAGAGCAGTTGCATAACAATTTCGGCTAGGATAACCAGTTTAGGGCGGAGCAGCGCAAGCTGCGGGTTCTCCAGGCCGATCCAGGCCGAGCTCAATGTCGAGGAAGATCGTTCCTACAAGACCTTCAATTCAATGAACGATGCCGGTCCTATTTGGTCCTATTTTCATGCTGGCCAATAAAGTCTCATGGAACTGCCAAGCCAGGGCATTTACATGCACTCCGTTGTAT

Full Affymetrix probeset data:

Annotations for 1640430_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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