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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1640483_at:

>probe:Drosophila_2:1640483_at:244:123; Interrogation_Position=1813; Antisense; AGCGATCACGAGATCATCAGCCTCT
>probe:Drosophila_2:1640483_at:105:101; Interrogation_Position=1859; Antisense; AGAGTCAACCAAATGCCTGCGATCG
>probe:Drosophila_2:1640483_at:57:333; Interrogation_Position=1897; Antisense; GCGGCGGCTCATCTCGAGCTTAAGA
>probe:Drosophila_2:1640483_at:207:423; Interrogation_Position=1920; Antisense; GAGAACCCTGTGGAATGCTCGGGAT
>probe:Drosophila_2:1640483_at:310:303; Interrogation_Position=1987; Antisense; CCATTCCTGCCCGAAGTTAAGGTGA
>probe:Drosophila_2:1640483_at:673:627; Interrogation_Position=2036; Antisense; TGCCATTCTCCTTGGAACTGATCGA
>probe:Drosophila_2:1640483_at:461:533; Interrogation_Position=2106; Antisense; GGTGTGCGACCTAATGAACTTCATC
>probe:Drosophila_2:1640483_at:371:385; Interrogation_Position=2121; Antisense; GAACTTCATCGACGTATCATGCGGC
>probe:Drosophila_2:1640483_at:534:679; Interrogation_Position=2135; Antisense; TATCATGCGGCAAGGGCTGCGACAT
>probe:Drosophila_2:1640483_at:667:43; Interrogation_Position=2197; Antisense; ATCCCGTTCCTGAACAAGGGTCGTG
>probe:Drosophila_2:1640483_at:721:217; Interrogation_Position=2212; Antisense; AAGGGTCGTGTGGTGAACTTCACTT
>probe:Drosophila_2:1640483_at:612:383; Interrogation_Position=2226; Antisense; GAACTTCACTTGCTTCCTGAGGGAA
>probe:Drosophila_2:1640483_at:153:457; Interrogation_Position=2344; Antisense; GATACCGATGCCCACAAGGCGAATG
>probe:Drosophila_2:1640483_at:594:607; Interrogation_Position=2367; Antisense; TGAGGACGACGCACAGCACATGGCT

Paste this into a BLAST search page for me
AGCGATCACGAGATCATCAGCCTCTAGAGTCAACCAAATGCCTGCGATCGGCGGCGGCTCATCTCGAGCTTAAGAGAGAACCCTGTGGAATGCTCGGGATCCATTCCTGCCCGAAGTTAAGGTGATGCCATTCTCCTTGGAACTGATCGAGGTGTGCGACCTAATGAACTTCATCGAACTTCATCGACGTATCATGCGGCTATCATGCGGCAAGGGCTGCGACATATCCCGTTCCTGAACAAGGGTCGTGAAGGGTCGTGTGGTGAACTTCACTTGAACTTCACTTGCTTCCTGAGGGAAGATACCGATGCCCACAAGGCGAATGTGAGGACGACGCACAGCACATGGCT

Full Affymetrix probeset data:

Annotations for 1640483_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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