FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1640558_a_at:

>probe:Drosophila_2:1640558_a_at:238:651; Interrogation_Position=1752; Antisense; TCACCGCCCACTGAGATATCTGGAA
>probe:Drosophila_2:1640558_a_at:207:559; Interrogation_Position=1773; Antisense; GGAACCCATAACAATTCGGCTACTG
>probe:Drosophila_2:1640558_a_at:297:715; Interrogation_Position=1787; Antisense; TTCGGCTACTGCTCGGTGTAAGACA
>probe:Drosophila_2:1640558_a_at:295:689; Interrogation_Position=1868; Antisense; TATTTATACAGCGTAGCCTACCCCA
>probe:Drosophila_2:1640558_a_at:130:301; Interrogation_Position=1888; Antisense; CCCCAAATCCTTCCCAATGATTGTA
>probe:Drosophila_2:1640558_a_at:452:301; Interrogation_Position=1942; Antisense; CCCACGCCCTATTCATGTTAGATGT
>probe:Drosophila_2:1640558_a_at:307:637; Interrogation_Position=1985; Antisense; TCGGCAGTTATTACTTTTACACTTT
>probe:Drosophila_2:1640558_a_at:143:659; Interrogation_Position=2070; Antisense; TAAGTTTTTAATCCTGACCACCGCT
>probe:Drosophila_2:1640558_a_at:450:411; Interrogation_Position=2085; Antisense; GACCACCGCTTAAATTTACGTATCG
>probe:Drosophila_2:1640558_a_at:479:707; Interrogation_Position=2100; Antisense; TTACGTATCGAACTGCATTTAAGCA
>probe:Drosophila_2:1640558_a_at:83:705; Interrogation_Position=2135; Antisense; TTATATTTTTATTCAGCACCACGCT
>probe:Drosophila_2:1640558_a_at:419:353; Interrogation_Position=2150; Antisense; GCACCACGCTACAAATGTTTCAACC
>probe:Drosophila_2:1640558_a_at:268:479; Interrogation_Position=2166; Antisense; GTTTCAACCATCACATATTCGTATT
>probe:Drosophila_2:1640558_a_at:330:477; Interrogation_Position=2203; Antisense; GTTTTGGTTTGATATGCACTTCTTT

Paste this into a BLAST search page for me
TCACCGCCCACTGAGATATCTGGAAGGAACCCATAACAATTCGGCTACTGTTCGGCTACTGCTCGGTGTAAGACATATTTATACAGCGTAGCCTACCCCACCCCAAATCCTTCCCAATGATTGTACCCACGCCCTATTCATGTTAGATGTTCGGCAGTTATTACTTTTACACTTTTAAGTTTTTAATCCTGACCACCGCTGACCACCGCTTAAATTTACGTATCGTTACGTATCGAACTGCATTTAAGCATTATATTTTTATTCAGCACCACGCTGCACCACGCTACAAATGTTTCAACCGTTTCAACCATCACATATTCGTATTGTTTTGGTTTGATATGCACTTCTTT

Full Affymetrix probeset data:

Annotations for 1640558_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720