FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1640596_a_at:

>probe:Drosophila_2:1640596_a_at:468:81; Interrogation_Position=2379; Antisense; AGGGCGGCCCACAGATACCGGCGCA
>probe:Drosophila_2:1640596_a_at:10:353; Interrogation_Position=2602; Antisense; GCAGCAACAGCCAAACGAATCGGAT
>probe:Drosophila_2:1640596_a_at:300:367; Interrogation_Position=2618; Antisense; GAATCGGATGTCGTGCCCATTAGCA
>probe:Drosophila_2:1640596_a_at:531:507; Interrogation_Position=2630; Antisense; GTGCCCATTAGCACGGCCATGGATA
>probe:Drosophila_2:1640596_a_at:125:545; Interrogation_Position=2650; Antisense; GGATACCGCCATCTATGATCGGGAT
>probe:Drosophila_2:1640596_a_at:725:543; Interrogation_Position=2671; Antisense; GGATAAGCAGATCTACAAGTGCTCC
>probe:Drosophila_2:1640596_a_at:48:221; Interrogation_Position=2687; Antisense; AAGTGCTCCACTTTGCGGCAGGGCG
>probe:Drosophila_2:1640596_a_at:196:567; Interrogation_Position=2703; Antisense; GGCAGGGCGGCAAGTTTGATCCCAA
>probe:Drosophila_2:1640596_a_at:319:481; Interrogation_Position=2716; Antisense; GTTTGATCCCAAGTACAAGCCATCG
>probe:Drosophila_2:1640596_a_at:49:491; Interrogation_Position=2728; Antisense; GTACAAGCCATCGATTCTCAACTGC
>probe:Drosophila_2:1640596_a_at:297:143; Interrogation_Position=2755; Antisense; ACTGCCGGAGATCCCCAAAGATGCG
>probe:Drosophila_2:1640596_a_at:96:47; Interrogation_Position=2765; Antisense; ATCCCCAAAGATGCGGAGCAGCCTA
>probe:Drosophila_2:1640596_a_at:322:421; Interrogation_Position=2780; Antisense; GAGCAGCCTAAGGTGGAGTCCATCT
>probe:Drosophila_2:1640596_a_at:56:657; Interrogation_Position=2788; Antisense; TAAGGTGGAGTCCATCTACGAGCAG

Paste this into a BLAST search page for me
AGGGCGGCCCACAGATACCGGCGCAGCAGCAACAGCCAAACGAATCGGATGAATCGGATGTCGTGCCCATTAGCAGTGCCCATTAGCACGGCCATGGATAGGATACCGCCATCTATGATCGGGATGGATAAGCAGATCTACAAGTGCTCCAAGTGCTCCACTTTGCGGCAGGGCGGGCAGGGCGGCAAGTTTGATCCCAAGTTTGATCCCAAGTACAAGCCATCGGTACAAGCCATCGATTCTCAACTGCACTGCCGGAGATCCCCAAAGATGCGATCCCCAAAGATGCGGAGCAGCCTAGAGCAGCCTAAGGTGGAGTCCATCTTAAGGTGGAGTCCATCTACGAGCAG

Full Affymetrix probeset data:

Annotations for 1640596_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720