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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1640628_at:

>probe:Drosophila_2:1640628_at:411:329; Interrogation_Position=2218; Antisense; GCGTGCGTCGCACAATTGACTTTGA
>probe:Drosophila_2:1640628_at:385:461; Interrogation_Position=2309; Antisense; GATTCTGGACCTGAACTCAACGGAG
>probe:Drosophila_2:1640628_at:511:191; Interrogation_Position=2394; Antisense; AACTTCATTCCACTGGGCATGGTGC
>probe:Drosophila_2:1640628_at:627:269; Interrogation_Position=2411; Antisense; CATGGTGCGCAGTGGATGCCAGTTC
>probe:Drosophila_2:1640628_at:395:109; Interrogation_Position=2437; Antisense; AGCGGGCGATTCTCTTCAAGGGCTT
>probe:Drosophila_2:1640628_at:47:55; Interrogation_Position=2483; Antisense; ATGCACCTTGCAACGCAGTGTGGAC
>probe:Drosophila_2:1640628_at:217:595; Interrogation_Position=2501; Antisense; TGTGGACGGTCGCATGCTGTACAAC
>probe:Drosophila_2:1640628_at:209:619; Interrogation_Position=2515; Antisense; TGCTGTACAACGAATTGCCACTGCC
>probe:Drosophila_2:1640628_at:317:213; Interrogation_Position=2574; Antisense; AAGACGCTAAAGTACATGCCCTGGC
>probe:Drosophila_2:1640628_at:355:587; Interrogation_Position=2623; Antisense; TGGACCTCCTCTACAACGTGGGCGA
>probe:Drosophila_2:1640628_at:380:575; Interrogation_Position=2643; Antisense; GGCGAGCTGTATCCCATGCAGAGTC
>probe:Drosophila_2:1640628_at:217:679; Interrogation_Position=2697; Antisense; TAGTTCCCATGATCTCTAATGCGCT
>probe:Drosophila_2:1640628_at:40:235; Interrogation_Position=2714; Antisense; AATGCGCTCACCAAATTATCCTGTC
>probe:Drosophila_2:1640628_at:488:505; Interrogation_Position=2736; Antisense; GTCCAATTGCTTCTCATATGCTATA

Paste this into a BLAST search page for me
GCGTGCGTCGCACAATTGACTTTGAGATTCTGGACCTGAACTCAACGGAGAACTTCATTCCACTGGGCATGGTGCCATGGTGCGCAGTGGATGCCAGTTCAGCGGGCGATTCTCTTCAAGGGCTTATGCACCTTGCAACGCAGTGTGGACTGTGGACGGTCGCATGCTGTACAACTGCTGTACAACGAATTGCCACTGCCAAGACGCTAAAGTACATGCCCTGGCTGGACCTCCTCTACAACGTGGGCGAGGCGAGCTGTATCCCATGCAGAGTCTAGTTCCCATGATCTCTAATGCGCTAATGCGCTCACCAAATTATCCTGTCGTCCAATTGCTTCTCATATGCTATA

Full Affymetrix probeset data:

Annotations for 1640628_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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