FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1640629_s_at:

>probe:Drosophila_2:1640629_s_at:620:9; Interrogation_Position=1259; Antisense; ATTAGGTTGGACAGTGCGTCCGCCT
>probe:Drosophila_2:1640629_s_at:536:415; Interrogation_Position=1290; Antisense; GAGCCATCATTTCGCCATACTACGA
>probe:Drosophila_2:1640629_s_at:573:669; Interrogation_Position=1310; Antisense; TACGACTCCCTGCTGGTCAAGGTGA
>probe:Drosophila_2:1640629_s_at:42:213; Interrogation_Position=1370; Antisense; AAGATGAACCGTGCCCTAAGGGAAT
>probe:Drosophila_2:1640629_s_at:388:345; Interrogation_Position=1398; Antisense; GCATTCGCGGCGTCAAGACCAATAT
>probe:Drosophila_2:1640629_s_at:244:385; Interrogation_Position=1512; Antisense; GAACATTCCCTTCCAGATGCTGTTG
>probe:Drosophila_2:1640629_s_at:491:117; Interrogation_Position=1564; Antisense; AGCTATCCGGACAACGTGGTCTACA
>probe:Drosophila_2:1640629_s_at:488:665; Interrogation_Position=1585; Antisense; TACAAGTTCTGTGAGCTGGCTGTGC
>probe:Drosophila_2:1640629_s_at:7:509; Interrogation_Position=1606; Antisense; GTGCAGACCGGCATGGACATCTTCA
>probe:Drosophila_2:1640629_s_at:467:401; Interrogation_Position=1621; Antisense; GACATCTTCAGGGTGTTCGACTCGC
>probe:Drosophila_2:1640629_s_at:36:633; Interrogation_Position=1743; Antisense; TCCCAAGCGCACCAAGTATGATCTG
>probe:Drosophila_2:1640629_s_at:415:29; Interrogation_Position=1770; Antisense; ATACTACACTAACCTTGCCGATGAG
>probe:Drosophila_2:1640629_s_at:391:355; Interrogation_Position=1808; Antisense; GCACCCACGTGCTCTGCATAAAGGA
>probe:Drosophila_2:1640629_s_at:303:169; Interrogation_Position=1827; Antisense; AAAGGATATGGCTGGTCTGCTCAAG

Paste this into a BLAST search page for me
ATTAGGTTGGACAGTGCGTCCGCCTGAGCCATCATTTCGCCATACTACGATACGACTCCCTGCTGGTCAAGGTGAAAGATGAACCGTGCCCTAAGGGAATGCATTCGCGGCGTCAAGACCAATATGAACATTCCCTTCCAGATGCTGTTGAGCTATCCGGACAACGTGGTCTACATACAAGTTCTGTGAGCTGGCTGTGCGTGCAGACCGGCATGGACATCTTCAGACATCTTCAGGGTGTTCGACTCGCTCCCAAGCGCACCAAGTATGATCTGATACTACACTAACCTTGCCGATGAGGCACCCACGTGCTCTGCATAAAGGAAAAGGATATGGCTGGTCTGCTCAAG

Full Affymetrix probeset data:

Annotations for 1640629_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720