FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1640656_a_at:

>probe:Drosophila_2:1640656_a_at:685:211; Interrogation_Position=1883; Antisense; AAGACTCCGACCAAGGCAGCTGCTC
>probe:Drosophila_2:1640656_a_at:100:111; Interrogation_Position=1971; Antisense; AGAAGGCAACGCCTGCTCGCGCTGC
>probe:Drosophila_2:1640656_a_at:147:291; Interrogation_Position=2035; Antisense; CGGTCGCTACAATCGCTACTAAGTA
>probe:Drosophila_2:1640656_a_at:382:183; Interrogation_Position=2112; Antisense; AAAATTTACATTCACGCCCAGGAGG
>probe:Drosophila_2:1640656_a_at:326:97; Interrogation_Position=2153; Antisense; AGATCAAATCGATCTCTTCCCGCAA
>probe:Drosophila_2:1640656_a_at:133:39; Interrogation_Position=2164; Antisense; ATCTCTTCCCGCAATTTGACATTTG
>probe:Drosophila_2:1640656_a_at:442:725; Interrogation_Position=2179; Antisense; TTGACATTTGCATCCCAATTTGCAT
>probe:Drosophila_2:1640656_a_at:534:45; Interrogation_Position=2190; Antisense; ATCCCAATTTGCATATACACTGAAT
>probe:Drosophila_2:1640656_a_at:471:253; Interrogation_Position=2228; Antisense; GAAGAAGACGGTCAACTTTTAGTTG
>probe:Drosophila_2:1640656_a_at:393:21; Interrogation_Position=2265; Antisense; ATATTGTACGACGAAGCTTCTTGAA
>probe:Drosophila_2:1640656_a_at:184:207; Interrogation_Position=2278; Antisense; AAGCTTCTTGAAACTGACGAGGGAG
>probe:Drosophila_2:1640656_a_at:112:227; Interrogation_Position=2322; Antisense; AATCGAGAATCGTATTACCTACCCG
>probe:Drosophila_2:1640656_a_at:257:155; Interrogation_Position=2358; Antisense; ACAGAACGCATACCATGCCAGCCAG
>probe:Drosophila_2:1640656_a_at:523:121; Interrogation_Position=2381; Antisense; AGCGAACCAACCATTCAACTTATGT

Paste this into a BLAST search page for me
AAGACTCCGACCAAGGCAGCTGCTCAGAAGGCAACGCCTGCTCGCGCTGCCGGTCGCTACAATCGCTACTAAGTAAAAATTTACATTCACGCCCAGGAGGAGATCAAATCGATCTCTTCCCGCAAATCTCTTCCCGCAATTTGACATTTGTTGACATTTGCATCCCAATTTGCATATCCCAATTTGCATATACACTGAATGAAGAAGACGGTCAACTTTTAGTTGATATTGTACGACGAAGCTTCTTGAAAAGCTTCTTGAAACTGACGAGGGAGAATCGAGAATCGTATTACCTACCCGACAGAACGCATACCATGCCAGCCAGAGCGAACCAACCATTCAACTTATGT

Full Affymetrix probeset data:

Annotations for 1640656_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720