FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1640659_s_at:

>probe:Drosophila_2:1640659_s_at:111:293; Interrogation_Position=1881; Antisense; CGTCGTCGTCGTCCAATTTGATGAA
>probe:Drosophila_2:1640659_s_at:485:151; Interrogation_Position=1905; Antisense; ACATCAGCCTGAACAACTCGTCCAG
>probe:Drosophila_2:1640659_s_at:603:637; Interrogation_Position=1922; Antisense; TCGTCCAGCGGCAATCTTGTTAACA
>probe:Drosophila_2:1640659_s_at:501:111; Interrogation_Position=1952; Antisense; AGCAACTCCTCACTGTCGGCGTTTA
>probe:Drosophila_2:1640659_s_at:1:229; Interrogation_Position=2032; Antisense; AATGGACACGTCCACCTGCAAGGAC
>probe:Drosophila_2:1640659_s_at:508:77; Interrogation_Position=2058; Antisense; AGGAGGATGCAGTAGCTCTCGCACA
>probe:Drosophila_2:1640659_s_at:258:487; Interrogation_Position=2069; Antisense; GTAGCTCTCGCACAGGGATACAGAA
>probe:Drosophila_2:1640659_s_at:451:403; Interrogation_Position=2101; Antisense; GACTTATTCACACACTTTCACACGA
>probe:Drosophila_2:1640659_s_at:454:135; Interrogation_Position=2147; Antisense; ACGCACGCATGCAAGCAACCAGTTT
>probe:Drosophila_2:1640659_s_at:663:491; Interrogation_Position=2218; Antisense; GTAACTATCGTAAGCTTCTCCAGGG
>probe:Drosophila_2:1640659_s_at:346:659; Interrogation_Position=2228; Antisense; TAAGCTTCTCCAGGGCGACTCAAAG
>probe:Drosophila_2:1640659_s_at:649:655; Interrogation_Position=2324; Antisense; TAACGGAATTCCTAGGCGAACGAAT
>probe:Drosophila_2:1640659_s_at:51:371; Interrogation_Position=2373; Antisense; GAATGTTTTTCTAATTTCGCTCGGT
>probe:Drosophila_2:1640659_s_at:412:655; Interrogation_Position=2384; Antisense; TAATTTCGCTCGGTTCCAGTTAAAG

Paste this into a BLAST search page for me
CGTCGTCGTCGTCCAATTTGATGAAACATCAGCCTGAACAACTCGTCCAGTCGTCCAGCGGCAATCTTGTTAACAAGCAACTCCTCACTGTCGGCGTTTAAATGGACACGTCCACCTGCAAGGACAGGAGGATGCAGTAGCTCTCGCACAGTAGCTCTCGCACAGGGATACAGAAGACTTATTCACACACTTTCACACGAACGCACGCATGCAAGCAACCAGTTTGTAACTATCGTAAGCTTCTCCAGGGTAAGCTTCTCCAGGGCGACTCAAAGTAACGGAATTCCTAGGCGAACGAATGAATGTTTTTCTAATTTCGCTCGGTTAATTTCGCTCGGTTCCAGTTAAAG

Full Affymetrix probeset data:

Annotations for 1640659_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720