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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1640732_s_at:

>probe:Drosophila_2:1640732_s_at:581:33; Interrogation_Position=5172; Antisense; ATCAGTCTGCCAAGTAGACCTCCAA
>probe:Drosophila_2:1640732_s_at:255:573; Interrogation_Position=5222; Antisense; GGCTCCAGCTCCTAATCTGGTTGAT
>probe:Drosophila_2:1640732_s_at:542:343; Interrogation_Position=5280; Antisense; GCTTCTGCATATGATGGCGCATCAC
>probe:Drosophila_2:1640732_s_at:17:325; Interrogation_Position=5296; Antisense; GCGCATCACCGTCAGCTTGGAAGAG
>probe:Drosophila_2:1640732_s_at:41:215; Interrogation_Position=5316; Antisense; AAGAGATCGGGCTCTGCTCCAGCAC
>probe:Drosophila_2:1640732_s_at:379:111; Interrogation_Position=5336; Antisense; AGCACCGAGTGTAGTTCCCAGGGCA
>probe:Drosophila_2:1640732_s_at:372:87; Interrogation_Position=5373; Antisense; AGTCCGTCTAGAAAGTCACCTTCAC
>probe:Drosophila_2:1640732_s_at:585:569; Interrogation_Position=5409; Antisense; GGCATATCTCCTTCTACAAGACAAG
>probe:Drosophila_2:1640732_s_at:720:211; Interrogation_Position=5448; Antisense; AAGAAATCAGGGTCGGCTCCAGCTC
>probe:Drosophila_2:1640732_s_at:530:189; Interrogation_Position=5480; Antisense; AACTTCTCGTGGACCATTCCGGACT
>probe:Drosophila_2:1640732_s_at:409:323; Interrogation_Position=5505; Antisense; GCGCCCTCCAATACAGAATTCATAA
>probe:Drosophila_2:1640732_s_at:566:393; Interrogation_Position=5560; Antisense; GAAATGAAACCCAAAGCACTCCCGG
>probe:Drosophila_2:1640732_s_at:268:175; Interrogation_Position=5607; Antisense; AAACCACAGCCCTAGTTTGAATCCT
>probe:Drosophila_2:1640732_s_at:518:603; Interrogation_Position=5624; Antisense; TGAATCCTCCTTTGTAAGTCCACCA

Paste this into a BLAST search page for me
ATCAGTCTGCCAAGTAGACCTCCAAGGCTCCAGCTCCTAATCTGGTTGATGCTTCTGCATATGATGGCGCATCACGCGCATCACCGTCAGCTTGGAAGAGAAGAGATCGGGCTCTGCTCCAGCACAGCACCGAGTGTAGTTCCCAGGGCAAGTCCGTCTAGAAAGTCACCTTCACGGCATATCTCCTTCTACAAGACAAGAAGAAATCAGGGTCGGCTCCAGCTCAACTTCTCGTGGACCATTCCGGACTGCGCCCTCCAATACAGAATTCATAAGAAATGAAACCCAAAGCACTCCCGGAAACCACAGCCCTAGTTTGAATCCTTGAATCCTCCTTTGTAAGTCCACCA

Full Affymetrix probeset data:

Annotations for 1640732_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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