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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1640789_a_at:

>probe:Drosophila_2:1640789_a_at:433:703; Interrogation_Position=1083; Antisense; TTATGAAGAGCGTCTGCCCGTGGTT
>probe:Drosophila_2:1640789_a_at:167:315; Interrogation_Position=1134; Antisense; GCCATATAGTGGACTCGCGCGAGAT
>probe:Drosophila_2:1640789_a_at:243:649; Interrogation_Position=1161; Antisense; TCACCGCCATCATTCAGGAGATTAT
>probe:Drosophila_2:1640789_a_at:449:685; Interrogation_Position=1183; Antisense; TATCAAGCAGCGTGCCGAGATCTAT
>probe:Drosophila_2:1640789_a_at:559:451; Interrogation_Position=1201; Antisense; GATCTATGCCGGCTACAAGGAACCT
>probe:Drosophila_2:1640789_a_at:488:615; Interrogation_Position=1225; Antisense; TGAATCGGAACCATCCGGACCGGAT
>probe:Drosophila_2:1640789_a_at:120:437; Interrogation_Position=1292; Antisense; GAGGCGTGTCCCTGCGAATCGGAAA
>probe:Drosophila_2:1640789_a_at:301:295; Interrogation_Position=1319; Antisense; GAAATGGAGGAGTGCCCCGAACCGC
>probe:Drosophila_2:1640789_a_at:692:571; Interrogation_Position=1351; Antisense; GGCTCCTCATCTCTAAGTGATTGCG
>probe:Drosophila_2:1640789_a_at:45:531; Interrogation_Position=1408; Antisense; GGGATACTGATTCCGCACACATGTA
>probe:Drosophila_2:1640789_a_at:574:661; Interrogation_Position=1431; Antisense; TAACACTAACACACTCCTGCTATTA
>probe:Drosophila_2:1640789_a_at:200:377; Interrogation_Position=1493; Antisense; GAAGAACTCAATTCGCCGCAGGATT
>probe:Drosophila_2:1640789_a_at:213:463; Interrogation_Position=1514; Antisense; GATTCGAATCGAGCCTGGGCGCCAA
>probe:Drosophila_2:1640789_a_at:284:187; Interrogation_Position=1538; Antisense; AACACAATTGCATAGCGGCGGCGGC

Paste this into a BLAST search page for me
TTATGAAGAGCGTCTGCCCGTGGTTGCCATATAGTGGACTCGCGCGAGATTCACCGCCATCATTCAGGAGATTATTATCAAGCAGCGTGCCGAGATCTATGATCTATGCCGGCTACAAGGAACCTTGAATCGGAACCATCCGGACCGGATGAGGCGTGTCCCTGCGAATCGGAAAGAAATGGAGGAGTGCCCCGAACCGCGGCTCCTCATCTCTAAGTGATTGCGGGGATACTGATTCCGCACACATGTATAACACTAACACACTCCTGCTATTAGAAGAACTCAATTCGCCGCAGGATTGATTCGAATCGAGCCTGGGCGCCAAAACACAATTGCATAGCGGCGGCGGC

Full Affymetrix probeset data:

Annotations for 1640789_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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