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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1640838_s_at:

>probe:Drosophila_2:1640838_s_at:324:357; Interrogation_Position=2573; Antisense; GCAACAACAAAAGAACGCAACGTAA
>probe:Drosophila_2:1640838_s_at:222:601; Interrogation_Position=2696; Antisense; TGTACGAACTTCATATCCCTAATCC
>probe:Drosophila_2:1640838_s_at:445:45; Interrogation_Position=2710; Antisense; ATCCCTAATCCAAGATATACGCAAG
>probe:Drosophila_2:1640838_s_at:705:685; Interrogation_Position=2725; Antisense; TATACGCAAGCAAAAGTCCGAGTTA
>probe:Drosophila_2:1640838_s_at:476:171; Interrogation_Position=2737; Antisense; AAAGTCCGAGTTACACGCGACACCA
>probe:Drosophila_2:1640838_s_at:15:133; Interrogation_Position=2819; Antisense; ACCCACGCGCAGGAATCAATAGTTT
>probe:Drosophila_2:1640838_s_at:260:5; Interrogation_Position=2849; Antisense; ATTGATGCCTCTCAATTCCAGATCG
>probe:Drosophila_2:1640838_s_at:596:313; Interrogation_Position=2855; Antisense; GCCTCTCAATTCCAGATCGGGTTAA
>probe:Drosophila_2:1640838_s_at:200:693; Interrogation_Position=2876; Antisense; TTAAGTCCCCAAAAACACATCCATC
>probe:Drosophila_2:1640838_s_at:558:181; Interrogation_Position=2886; Antisense; AAAAACACATCCATCACCCATCAAG
>probe:Drosophila_2:1640838_s_at:331:159; Interrogation_Position=2928; Antisense; ACAAGCGCATACATACCATTCTCAT
>probe:Drosophila_2:1640838_s_at:131:347; Interrogation_Position=2934; Antisense; GCATACATACCATTCTCATATTGAT
>probe:Drosophila_2:1640838_s_at:663:279; Interrogation_Position=2948; Antisense; CTCATATTGATGATCTTGATAGCGA
>probe:Drosophila_2:1640838_s_at:396:653; Interrogation_Position=3028; Antisense; TAATTTCTACTATACATTTAACTGT

Paste this into a BLAST search page for me
GCAACAACAAAAGAACGCAACGTAATGTACGAACTTCATATCCCTAATCCATCCCTAATCCAAGATATACGCAAGTATACGCAAGCAAAAGTCCGAGTTAAAAGTCCGAGTTACACGCGACACCAACCCACGCGCAGGAATCAATAGTTTATTGATGCCTCTCAATTCCAGATCGGCCTCTCAATTCCAGATCGGGTTAATTAAGTCCCCAAAAACACATCCATCAAAAACACATCCATCACCCATCAAGACAAGCGCATACATACCATTCTCATGCATACATACCATTCTCATATTGATCTCATATTGATGATCTTGATAGCGATAATTTCTACTATACATTTAACTGT

Full Affymetrix probeset data:

Annotations for 1640838_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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