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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1640922_a_at:

>probe:Drosophila_2:1640922_a_at:560:213; Interrogation_Position=2668; Antisense; AAGATCCGGGCTCCCGAGATGCTAA
>probe:Drosophila_2:1640922_a_at:275:199; Interrogation_Position=2691; Antisense; AACCGCACCCGCTGGTTATGGAACG
>probe:Drosophila_2:1640922_a_at:730:677; Interrogation_Position=2707; Antisense; TATGGAACGGAACCCTGTCGCATGA
>probe:Drosophila_2:1640922_a_at:649:501; Interrogation_Position=2723; Antisense; GTCGCATGACACTTAAACAGGAGCC
>probe:Drosophila_2:1640922_a_at:448:313; Interrogation_Position=2745; Antisense; GCCAGAGACTGGTTACTAGAAGAAT
>probe:Drosophila_2:1640922_a_at:525:241; Interrogation_Position=2766; Antisense; GAATAACGAACGGTGCAATATGCAG
>probe:Drosophila_2:1640922_a_at:500:617; Interrogation_Position=2786; Antisense; TGCAGTTTGCAATAGGACACCCCTT
>probe:Drosophila_2:1640922_a_at:193:711; Interrogation_Position=2809; Antisense; TTAAGCACACAACCCATACACATAC
>probe:Drosophila_2:1640922_a_at:622:667; Interrogation_Position=2850; Antisense; TACTCCCCACCAAGTGCTATATAGA
>probe:Drosophila_2:1640922_a_at:134:477; Interrogation_Position=2906; Antisense; GTTATGCCTTGAACCATTTTGATAC
>probe:Drosophila_2:1640922_a_at:361:155; Interrogation_Position=3060; Antisense; ACACCATTTAGCATGTACTGAGTTT
>probe:Drosophila_2:1640922_a_at:648:589; Interrogation_Position=3095; Antisense; TGGTTATCTTATACTTGTGCGTGGA
>probe:Drosophila_2:1640922_a_at:379:623; Interrogation_Position=3112; Antisense; TGCGTGGATCACAAAACATTCATAT
>probe:Drosophila_2:1640922_a_at:137:81; Interrogation_Position=3165; Antisense; AGGGTGTTGTCTAGATTATGCTGAA

Paste this into a BLAST search page for me
AAGATCCGGGCTCCCGAGATGCTAAAACCGCACCCGCTGGTTATGGAACGTATGGAACGGAACCCTGTCGCATGAGTCGCATGACACTTAAACAGGAGCCGCCAGAGACTGGTTACTAGAAGAATGAATAACGAACGGTGCAATATGCAGTGCAGTTTGCAATAGGACACCCCTTTTAAGCACACAACCCATACACATACTACTCCCCACCAAGTGCTATATAGAGTTATGCCTTGAACCATTTTGATACACACCATTTAGCATGTACTGAGTTTTGGTTATCTTATACTTGTGCGTGGATGCGTGGATCACAAAACATTCATATAGGGTGTTGTCTAGATTATGCTGAA

Full Affymetrix probeset data:

Annotations for 1640922_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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