FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1640968_a_at:

>probe:Drosophila_2:1640968_a_at:637:73; Interrogation_Position=5131; Antisense; AGGAGCTGATCGCTGATCGCTGATC
>probe:Drosophila_2:1640968_a_at:79:451; Interrogation_Position=5145; Antisense; GATCGCTGATCGAAGCTGCAAGCTG
>probe:Drosophila_2:1640968_a_at:550:333; Interrogation_Position=5166; Antisense; GCTGGATGGAAGCTCTTTGCTTGCC
>probe:Drosophila_2:1640968_a_at:400:275; Interrogation_Position=5180; Antisense; CTTTGCTTGCCCTGCGGGAAATGAA
>probe:Drosophila_2:1640968_a_at:451:643; Interrogation_Position=5306; Antisense; TCTCCGCCTCTTCTTACACATTATT
>probe:Drosophila_2:1640968_a_at:513:257; Interrogation_Position=5322; Antisense; CACATTATTCGCCAGCATTTACCAG
>probe:Drosophila_2:1640968_a_at:275:231; Interrogation_Position=5370; Antisense; AATGATTGTTTTGACGTTTCTCGGA
>probe:Drosophila_2:1640968_a_at:638:549; Interrogation_Position=5392; Antisense; GGAGAAATTTCCTTGCTAGCTTTAC
>probe:Drosophila_2:1640968_a_at:105:361; Interrogation_Position=5437; Antisense; GCAAGAGCTTGAGTCAGGCTTCCTT
>probe:Drosophila_2:1640968_a_at:251:645; Interrogation_Position=5450; Antisense; TCAGGCTTCCTTTGGGTTTTAGTGC
>probe:Drosophila_2:1640968_a_at:214:315; Interrogation_Position=5473; Antisense; GCCTCCGTTGTCTCCGAATTAATGA
>probe:Drosophila_2:1640968_a_at:82:483; Interrogation_Position=5518; Antisense; GTATTACTTCTTTGCCCGTCATAAA
>probe:Drosophila_2:1640968_a_at:502:297; Interrogation_Position=5531; Antisense; GCCCGTCATAAATCGGTTTGGTTAT
>probe:Drosophila_2:1640968_a_at:605:375; Interrogation_Position=5571; Antisense; GAAGCATCTGTTGTGGTCTGTTTTG

Paste this into a BLAST search page for me
AGGAGCTGATCGCTGATCGCTGATCGATCGCTGATCGAAGCTGCAAGCTGGCTGGATGGAAGCTCTTTGCTTGCCCTTTGCTTGCCCTGCGGGAAATGAATCTCCGCCTCTTCTTACACATTATTCACATTATTCGCCAGCATTTACCAGAATGATTGTTTTGACGTTTCTCGGAGGAGAAATTTCCTTGCTAGCTTTACGCAAGAGCTTGAGTCAGGCTTCCTTTCAGGCTTCCTTTGGGTTTTAGTGCGCCTCCGTTGTCTCCGAATTAATGAGTATTACTTCTTTGCCCGTCATAAAGCCCGTCATAAATCGGTTTGGTTATGAAGCATCTGTTGTGGTCTGTTTTG

Full Affymetrix probeset data:

Annotations for 1640968_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720