FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1640974_a_at:

>probe:Drosophila_2:1640974_a_at:429:615; Interrogation_Position=4209; Antisense; TGCAAAGTAAGTGCCCTGGACGACT
>probe:Drosophila_2:1640974_a_at:6:303; Interrogation_Position=4222; Antisense; CCCTGGACGACTTCTGAGTGTTTTT
>probe:Drosophila_2:1640974_a_at:67:129; Interrogation_Position=4250; Antisense; ACCAGACTCTTACGTGTATTCCGTG
>probe:Drosophila_2:1640974_a_at:285:99; Interrogation_Position=4276; Antisense; AGATGTTTCTGTAGCGCGATCGTAC
>probe:Drosophila_2:1640974_a_at:50:125; Interrogation_Position=4288; Antisense; AGCGCGATCGTACCCTATACAAAAA
>probe:Drosophila_2:1640974_a_at:402:171; Interrogation_Position=4314; Antisense; AAAGTATATCTCATGTTAGGCGAAC
>probe:Drosophila_2:1640974_a_at:484:37; Interrogation_Position=4390; Antisense; ATCTATGGCACCAAGCCCATTTGCT
>probe:Drosophila_2:1640974_a_at:699:631; Interrogation_Position=4414; Antisense; TCCCGCTCACTTGTTTAGGTAGTCT
>probe:Drosophila_2:1640974_a_at:570:159; Interrogation_Position=4464; Antisense; AAATTTTATCTATCCACCTACGCGT
>probe:Drosophila_2:1640974_a_at:438:261; Interrogation_Position=4478; Antisense; CACCTACGCGTTAGACACCTGAAAT
>probe:Drosophila_2:1640974_a_at:4:395; Interrogation_Position=4498; Antisense; GAAATCTATCCTATACAGTTCGTTT
>probe:Drosophila_2:1640974_a_at:1:667; Interrogation_Position=4549; Antisense; TACACATGCACTTGTACCTACATCA
>probe:Drosophila_2:1640974_a_at:696:271; Interrogation_Position=4654; Antisense; CATCATTTGGATGGGTCAGCAGTAA
>probe:Drosophila_2:1640974_a_at:146:473; Interrogation_Position=4689; Antisense; GTTCTAGTTTACGTTCAATTCGCTA

Paste this into a BLAST search page for me
TGCAAAGTAAGTGCCCTGGACGACTCCCTGGACGACTTCTGAGTGTTTTTACCAGACTCTTACGTGTATTCCGTGAGATGTTTCTGTAGCGCGATCGTACAGCGCGATCGTACCCTATACAAAAAAAAGTATATCTCATGTTAGGCGAACATCTATGGCACCAAGCCCATTTGCTTCCCGCTCACTTGTTTAGGTAGTCTAAATTTTATCTATCCACCTACGCGTCACCTACGCGTTAGACACCTGAAATGAAATCTATCCTATACAGTTCGTTTTACACATGCACTTGTACCTACATCACATCATTTGGATGGGTCAGCAGTAAGTTCTAGTTTACGTTCAATTCGCTA

Full Affymetrix probeset data:

Annotations for 1640974_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720