FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1641006_s_at:

>probe:Drosophila_2:1641006_s_at:37:715; Interrogation_Position=6292; Antisense; TTCTAGCTCGCTGGTCTGTAATATC
>probe:Drosophila_2:1641006_s_at:402:337; Interrogation_Position=6297; Antisense; GCTCGCTGGTCTGTAATATCTAAAA
>probe:Drosophila_2:1641006_s_at:39:37; Interrogation_Position=6343; Antisense; ATCATTACTAACTTTTTTGCACTTT
>probe:Drosophila_2:1641006_s_at:248:661; Interrogation_Position=6432; Antisense; TAACGCACAGATACAGATTCTTTCT
>probe:Drosophila_2:1641006_s_at:449:465; Interrogation_Position=6457; Antisense; GATTGTATTTTGTTTCTCACTTAAT
>probe:Drosophila_2:1641006_s_at:583:247; Interrogation_Position=6490; Antisense; AATTGCTTTCAGTGTCTCAATGAGA
>probe:Drosophila_2:1641006_s_at:596:439; Interrogation_Position=6513; Antisense; GATGGCATCCAAAGCAAACTCCTGA
>probe:Drosophila_2:1641006_s_at:89:113; Interrogation_Position=6525; Antisense; AGCAAACTCCTGACTGCGTCTAAAA
>probe:Drosophila_2:1641006_s_at:637:655; Interrogation_Position=6637; Antisense; TAATAAGAGCACACACACACCGCAA
>probe:Drosophila_2:1641006_s_at:405:191; Interrogation_Position=6692; Antisense; AACATTCAAAAGCTACTTCTGCCTG
>probe:Drosophila_2:1641006_s_at:11:341; Interrogation_Position=6703; Antisense; GCTACTTCTGCCTGAGCATTTCAAA
>probe:Drosophila_2:1641006_s_at:524:147; Interrogation_Position=6751; Antisense; ACTACCTAAGACGTATCTGATGTTT
>probe:Drosophila_2:1641006_s_at:38:35; Interrogation_Position=6828; Antisense; ATCGTAAAAATGTTAGCTGGCGGTA
>probe:Drosophila_2:1641006_s_at:363:331; Interrogation_Position=6843; Antisense; GCTGGCGGTAATCACTTTTGGCACA

Paste this into a BLAST search page for me
TTCTAGCTCGCTGGTCTGTAATATCGCTCGCTGGTCTGTAATATCTAAAAATCATTACTAACTTTTTTGCACTTTTAACGCACAGATACAGATTCTTTCTGATTGTATTTTGTTTCTCACTTAATAATTGCTTTCAGTGTCTCAATGAGAGATGGCATCCAAAGCAAACTCCTGAAGCAAACTCCTGACTGCGTCTAAAATAATAAGAGCACACACACACCGCAAAACATTCAAAAGCTACTTCTGCCTGGCTACTTCTGCCTGAGCATTTCAAAACTACCTAAGACGTATCTGATGTTTATCGTAAAAATGTTAGCTGGCGGTAGCTGGCGGTAATCACTTTTGGCACA

Full Affymetrix probeset data:

Annotations for 1641006_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720