FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1641033_a_at:

>probe:Drosophila_2:1641033_a_at:40:365; Interrogation_Position=2150; Antisense; GAATTAGCTAGCTGCTCTAAACGAA
>probe:Drosophila_2:1641033_a_at:582:477; Interrogation_Position=2196; Antisense; GTTTATTTTTTCTCATATCGAATCG
>probe:Drosophila_2:1641033_a_at:490:57; Interrogation_Position=2257; Antisense; ATGATTTATGTAACCAACTCTTTTA
>probe:Drosophila_2:1641033_a_at:479:151; Interrogation_Position=2311; Antisense; ACATATTTTCTAATCTACTGCACGA
>probe:Drosophila_2:1641033_a_at:56:355; Interrogation_Position=2330; Antisense; GCACGAATTTGCAATGTCTCATTTA
>probe:Drosophila_2:1641033_a_at:462:203; Interrogation_Position=2365; Antisense; AACCACATATGTATCTCTATATTTG
>probe:Drosophila_2:1641033_a_at:730:697; Interrogation_Position=2392; Antisense; TTTAAATATGCTACACTTTCAGTCA
>probe:Drosophila_2:1641033_a_at:286:267; Interrogation_Position=2411; Antisense; CAGTCATATTGTACTTTTCACTAGT
>probe:Drosophila_2:1641033_a_at:219:713; Interrogation_Position=2517; Antisense; TTCTAGACACTTTTAGCAATTGACT
>probe:Drosophila_2:1641033_a_at:108:23; Interrogation_Position=2576; Antisense; ATATATTGTCGCATAGAAGAGCAGA
>probe:Drosophila_2:1641033_a_at:399:375; Interrogation_Position=2591; Antisense; GAAGAGCAGAAAACAACCACAAACA
>probe:Drosophila_2:1641033_a_at:375:127; Interrogation_Position=2623; Antisense; ACCACCAGTGATTTTATATAAGCCG
>probe:Drosophila_2:1641033_a_at:581:657; Interrogation_Position=2641; Antisense; TAAGCCGATTTTCAAACTGTATTTT
>probe:Drosophila_2:1641033_a_at:483:485; Interrogation_Position=2670; Antisense; GTATGTGTTTCAAACTTGTGAATGC

Paste this into a BLAST search page for me
GAATTAGCTAGCTGCTCTAAACGAAGTTTATTTTTTCTCATATCGAATCGATGATTTATGTAACCAACTCTTTTAACATATTTTCTAATCTACTGCACGAGCACGAATTTGCAATGTCTCATTTAAACCACATATGTATCTCTATATTTGTTTAAATATGCTACACTTTCAGTCACAGTCATATTGTACTTTTCACTAGTTTCTAGACACTTTTAGCAATTGACTATATATTGTCGCATAGAAGAGCAGAGAAGAGCAGAAAACAACCACAAACAACCACCAGTGATTTTATATAAGCCGTAAGCCGATTTTCAAACTGTATTTTGTATGTGTTTCAAACTTGTGAATGC

Full Affymetrix probeset data:

Annotations for 1641033_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720