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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1641048_a_at:

>probe:Drosophila_2:1641048_a_at:418:653; Interrogation_Position=7558; Antisense; TAATTGAAAACCTAATGCCCGCTAT
>probe:Drosophila_2:1641048_a_at:92:657; Interrogation_Position=7570; Antisense; TAATGCCCGCTATTTGTGGACCAGG
>probe:Drosophila_2:1641048_a_at:35:521; Interrogation_Position=7585; Antisense; GTGGACCAGGTGAGGTATCCGCCCC
>probe:Drosophila_2:1641048_a_at:670:311; Interrogation_Position=7612; Antisense; GCCACGCCTATATTATAATGTACCA
>probe:Drosophila_2:1641048_a_at:306:101; Interrogation_Position=7648; Antisense; AGAGGTCTGAAGCTGCATCGCCGAC
>probe:Drosophila_2:1641048_a_at:99:303; Interrogation_Position=7672; Antisense; CCGAGCTAAGCTTTAATTTGTGTTT
>probe:Drosophila_2:1641048_a_at:370:363; Interrogation_Position=7765; Antisense; GAAATCACTTAGTTCGTATGGAATG
>probe:Drosophila_2:1641048_a_at:17:93; Interrogation_Position=7801; Antisense; AGTTCTAGCCTAACTACATTAGTTT
>probe:Drosophila_2:1641048_a_at:337:363; Interrogation_Position=7853; Antisense; GAATTGTGTCCGAAATATGCGAGTT
>probe:Drosophila_2:1641048_a_at:271:679; Interrogation_Position=7887; Antisense; TAGGTTCAGGATACGCTAATTTTGT
>probe:Drosophila_2:1641048_a_at:518:617; Interrogation_Position=7916; Antisense; TGCAGCATTGTCATTAACTTTTAAG
>probe:Drosophila_2:1641048_a_at:401:427; Interrogation_Position=7962; Antisense; GAGATATTAAGAGCTCCCGGCACCC
>probe:Drosophila_2:1641048_a_at:53:633; Interrogation_Position=7976; Antisense; TCCCGGCACCCAACAAAATGAATAT
>probe:Drosophila_2:1641048_a_at:281:425; Interrogation_Position=8008; Antisense; GAGACGGTGCGGAAACTGTCAGAAA

Paste this into a BLAST search page for me
TAATTGAAAACCTAATGCCCGCTATTAATGCCCGCTATTTGTGGACCAGGGTGGACCAGGTGAGGTATCCGCCCCGCCACGCCTATATTATAATGTACCAAGAGGTCTGAAGCTGCATCGCCGACCCGAGCTAAGCTTTAATTTGTGTTTGAAATCACTTAGTTCGTATGGAATGAGTTCTAGCCTAACTACATTAGTTTGAATTGTGTCCGAAATATGCGAGTTTAGGTTCAGGATACGCTAATTTTGTTGCAGCATTGTCATTAACTTTTAAGGAGATATTAAGAGCTCCCGGCACCCTCCCGGCACCCAACAAAATGAATATGAGACGGTGCGGAAACTGTCAGAAA

Full Affymetrix probeset data:

Annotations for 1641048_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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