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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1641099_a_at:

>probe:Drosophila_2:1641099_a_at:12:201; Interrogation_Position=1714; Antisense; AACCTGCCCAGCTTTGCAAGACTTT
>probe:Drosophila_2:1641099_a_at:696:355; Interrogation_Position=1729; Antisense; GCAAGACTTTCCTTTCGGGATCAGG
>probe:Drosophila_2:1641099_a_at:263:471; Interrogation_Position=1785; Antisense; GTTCCTGCTGAACGCAATCCAATGG
>probe:Drosophila_2:1641099_a_at:88:235; Interrogation_Position=1800; Antisense; AATCCAATGGTGCATTCCCCTGGAT
>probe:Drosophila_2:1641099_a_at:473:531; Interrogation_Position=1848; Antisense; GGTGGCGGAGCACTGCAATAATCTA
>probe:Drosophila_2:1641099_a_at:583:627; Interrogation_Position=1881; Antisense; TGCCAATGGCGACACTTGCATAACA
>probe:Drosophila_2:1641099_a_at:89:63; Interrogation_Position=1925; Antisense; ATGTGCGAACGCTCCACGAGATCTT
>probe:Drosophila_2:1641099_a_at:126:363; Interrogation_Position=1984; Antisense; GAATTCGCGTGCCTCAAGGCGATAG
>probe:Drosophila_2:1641099_a_at:48:227; Interrogation_Position=1999; Antisense; AAGGCGATAGTTCTCTTCCGGCCGG
>probe:Drosophila_2:1641099_a_at:644:109; Interrogation_Position=2057; Antisense; AGAATCTTCAGGATCAGGCGCACCA
>probe:Drosophila_2:1641099_a_at:715:263; Interrogation_Position=2104; Antisense; CAGATAGCCAGATTCGGACGACTCC
>probe:Drosophila_2:1641099_a_at:724:51; Interrogation_Position=2134; Antisense; ATGCTGCCGTTGCTGCGCATGATCA
>probe:Drosophila_2:1641099_a_at:64:349; Interrogation_Position=2150; Antisense; GCATGATCAGCTCCCACAAGATTGA
>probe:Drosophila_2:1641099_a_at:73:727; Interrogation_Position=2171; Antisense; TTGAGTCCATCTATTTTCAGCGCAC

Paste this into a BLAST search page for me
AACCTGCCCAGCTTTGCAAGACTTTGCAAGACTTTCCTTTCGGGATCAGGGTTCCTGCTGAACGCAATCCAATGGAATCCAATGGTGCATTCCCCTGGATGGTGGCGGAGCACTGCAATAATCTATGCCAATGGCGACACTTGCATAACAATGTGCGAACGCTCCACGAGATCTTGAATTCGCGTGCCTCAAGGCGATAGAAGGCGATAGTTCTCTTCCGGCCGGAGAATCTTCAGGATCAGGCGCACCACAGATAGCCAGATTCGGACGACTCCATGCTGCCGTTGCTGCGCATGATCAGCATGATCAGCTCCCACAAGATTGATTGAGTCCATCTATTTTCAGCGCAC

Full Affymetrix probeset data:

Annotations for 1641099_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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