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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1641104_s_at:

>probe:Drosophila_2:1641104_s_at:651:429; Interrogation_Position=1942; Antisense; GAGTACAAGTACTAAGCCAGCAACG
>probe:Drosophila_2:1641104_s_at:626:313; Interrogation_Position=1957; Antisense; GCCAGCAACGAATTTAAGTGACACA
>probe:Drosophila_2:1641104_s_at:11:85; Interrogation_Position=1973; Antisense; AGTGACACATTCGTTAAATAGTTTG
>probe:Drosophila_2:1641104_s_at:113:389; Interrogation_Position=2054; Antisense; GAAAACAACGTAACATTTATCGCCT
>probe:Drosophila_2:1641104_s_at:579:661; Interrogation_Position=2082; Antisense; TTAGGGATACTTTCAAGGTGTACAT
>probe:Drosophila_2:1641104_s_at:385:163; Interrogation_Position=2140; Antisense; AAATTTGCATTACATTCTCCCTATG
>probe:Drosophila_2:1641104_s_at:115:151; Interrogation_Position=2151; Antisense; ACATTCTCCCTATGATTAGTATTAC
>probe:Drosophila_2:1641104_s_at:270:163; Interrogation_Position=2197; Antisense; AAATTCCAAGCAAGCAATCCCAACT
>probe:Drosophila_2:1641104_s_at:93:237; Interrogation_Position=2212; Antisense; AATCCCAACTTTAAGCAATTGCATT
>probe:Drosophila_2:1641104_s_at:724:209; Interrogation_Position=2224; Antisense; AAGCAATTGCATTTGATTAGGTCGC
>probe:Drosophila_2:1641104_s_at:610:501; Interrogation_Position=2244; Antisense; GTCGCAAATTGTTGAGATTCGTATC
>probe:Drosophila_2:1641104_s_at:164:429; Interrogation_Position=2257; Antisense; GAGATTCGTATCTAGTATTTGTTAA
>probe:Drosophila_2:1641104_s_at:304:165; Interrogation_Position=2425; Antisense; AAATGCCGTTACAAGTTCGTGTTCA
>probe:Drosophila_2:1641104_s_at:436:471; Interrogation_Position=2439; Antisense; GTTCGTGTTCATAGTTGAGCTTTGT

Paste this into a BLAST search page for me
GAGTACAAGTACTAAGCCAGCAACGGCCAGCAACGAATTTAAGTGACACAAGTGACACATTCGTTAAATAGTTTGGAAAACAACGTAACATTTATCGCCTTTAGGGATACTTTCAAGGTGTACATAAATTTGCATTACATTCTCCCTATGACATTCTCCCTATGATTAGTATTACAAATTCCAAGCAAGCAATCCCAACTAATCCCAACTTTAAGCAATTGCATTAAGCAATTGCATTTGATTAGGTCGCGTCGCAAATTGTTGAGATTCGTATCGAGATTCGTATCTAGTATTTGTTAAAAATGCCGTTACAAGTTCGTGTTCAGTTCGTGTTCATAGTTGAGCTTTGT

Full Affymetrix probeset data:

Annotations for 1641104_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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