FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1641167_s_at:

>probe:Drosophila_2:1641167_s_at:445:513; Interrogation_Position=1007; Antisense; GTGATCGAACCCAAGTCCATGGAGA
>probe:Drosophila_2:1641167_s_at:675:657; Interrogation_Position=1039; Antisense; TAAGCTACAGCTTCCTATCGTGCTT
>probe:Drosophila_2:1641167_s_at:588:681; Interrogation_Position=1054; Antisense; TATCGTGCTTGCGACGTACCCCTTT
>probe:Drosophila_2:1641167_s_at:200:637; Interrogation_Position=1078; Antisense; TCGACACTCCGGTGATGCGGTCAAT
>probe:Drosophila_2:1641167_s_at:305:125; Interrogation_Position=1109; Antisense; ACCTGGCCGGAATCGGTGCTTAAGC
>probe:Drosophila_2:1641167_s_at:589:687; Interrogation_Position=1170; Antisense; TATTCCGGCCCTGGCTGCACGAGAA
>probe:Drosophila_2:1641167_s_at:515:377; Interrogation_Position=1192; Antisense; GAAGCCTATCGAGGCATAGCCCGCA
>probe:Drosophila_2:1641167_s_at:99:27; Interrogation_Position=1207; Antisense; ATAGCCCGCAGCTTTTAGGATTGCT
>probe:Drosophila_2:1641167_s_at:66:543; Interrogation_Position=1224; Antisense; GGATTGCTGTGTATCACAACTTGTT
>probe:Drosophila_2:1641167_s_at:66:475; Interrogation_Position=1246; Antisense; GTTAAGACCGATTTGCGCCATACAA
>probe:Drosophila_2:1641167_s_at:722:59; Interrogation_Position=1309; Antisense; ATGTTTCTGGTCTTTGCATTTGTAG
>probe:Drosophila_2:1641167_s_at:557:37; Interrogation_Position=1324; Antisense; GCATTTGTAGGTCTTCCGTTCCCAA
>probe:Drosophila_2:1641167_s_at:88:179; Interrogation_Position=1492; Antisense; AAACTGCACTCATTAACCTTCTAAC
>probe:Drosophila_2:1641167_s_at:132:137; Interrogation_Position=993; Antisense; ACGACGTCTTCTTCGTGATCGAACC

Paste this into a BLAST search page for me
GTGATCGAACCCAAGTCCATGGAGATAAGCTACAGCTTCCTATCGTGCTTTATCGTGCTTGCGACGTACCCCTTTTCGACACTCCGGTGATGCGGTCAATACCTGGCCGGAATCGGTGCTTAAGCTATTCCGGCCCTGGCTGCACGAGAAGAAGCCTATCGAGGCATAGCCCGCAATAGCCCGCAGCTTTTAGGATTGCTGGATTGCTGTGTATCACAACTTGTTGTTAAGACCGATTTGCGCCATACAAATGTTTCTGGTCTTTGCATTTGTAGGCATTTGTAGGTCTTCCGTTCCCAAAAACTGCACTCATTAACCTTCTAACACGACGTCTTCTTCGTGATCGAACC

Full Affymetrix probeset data:

Annotations for 1641167_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720