FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1641193_s_at:

>probe:Drosophila_2:1641193_s_at:347:521; Interrogation_Position=1102; Antisense; GTGGCTATCGCAATGACGGACCTCG
>probe:Drosophila_2:1641193_s_at:98:533; Interrogation_Position=1134; Antisense; GGTGGTTATCGCAACGACGGACCTC
>probe:Drosophila_2:1641193_s_at:49:281; Interrogation_Position=1156; Antisense; CTCGCGGAGAGGGTCCACGCAATGA
>probe:Drosophila_2:1641193_s_at:17:413; Interrogation_Position=1183; Antisense; GACCGCGTGGAGAAGGCTACCGCAA
>probe:Drosophila_2:1641193_s_at:330:197; Interrogation_Position=1251; Antisense; AACGGACCCAGCAACGGCTATGAAA
>probe:Drosophila_2:1641193_s_at:513:379; Interrogation_Position=1322; Antisense; GAAGCCACTGAAGGTTGACGATGAA
>probe:Drosophila_2:1641193_s_at:510:611; Interrogation_Position=1337; Antisense; TGACGATGAAGCTCAATTCCCCACT
>probe:Drosophila_2:1641193_s_at:241:245; Interrogation_Position=1351; Antisense; AATTCCCCACTCTGTGCTAGGAGTT
>probe:Drosophila_2:1641193_s_at:27:659; Interrogation_Position=1421; Antisense; TAAGCTGGTCCTTCGGTTAACAAAT
>probe:Drosophila_2:1641193_s_at:153:661; Interrogation_Position=1445; Antisense; TAACCATTAGATTTTCGGGCGCGAT
>probe:Drosophila_2:1641193_s_at:728:523; Interrogation_Position=1461; Antisense; GGGCGCGATCTATGAAGCTTGACGA
>probe:Drosophila_2:1641193_s_at:453:187; Interrogation_Position=1496; Antisense; AACAGAAACAAATCAGCCACGCTTA
>probe:Drosophila_2:1641193_s_at:151:307; Interrogation_Position=1512; Antisense; CCACGCTTATCCATATTCCTTAGTT
>probe:Drosophila_2:1641193_s_at:161:17; Interrogation_Position=1555; Antisense; ATTTTTCACTCTCATCATTTACGCA

Paste this into a BLAST search page for me
GTGGCTATCGCAATGACGGACCTCGGGTGGTTATCGCAACGACGGACCTCCTCGCGGAGAGGGTCCACGCAATGAGACCGCGTGGAGAAGGCTACCGCAAAACGGACCCAGCAACGGCTATGAAAGAAGCCACTGAAGGTTGACGATGAATGACGATGAAGCTCAATTCCCCACTAATTCCCCACTCTGTGCTAGGAGTTTAAGCTGGTCCTTCGGTTAACAAATTAACCATTAGATTTTCGGGCGCGATGGGCGCGATCTATGAAGCTTGACGAAACAGAAACAAATCAGCCACGCTTACCACGCTTATCCATATTCCTTAGTTATTTTTCACTCTCATCATTTACGCA

Full Affymetrix probeset data:

Annotations for 1641193_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720