FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1641226_a_at:

>probe:Drosophila_2:1641226_a_at:324:193; Interrogation_Position=12261; Antisense; AACTAACAGCAACAGCTAGATGGAA
>probe:Drosophila_2:1641226_a_at:549:439; Interrogation_Position=12279; Antisense; GATGGAAAATTGCTACATGGCTTTG
>probe:Drosophila_2:1641226_a_at:75:339; Interrogation_Position=12290; Antisense; GCTACATGGCTTTGTTCTTTAGTTT
>probe:Drosophila_2:1641226_a_at:718:15; Interrogation_Position=12347; Antisense; ATTTAACTTCGCAGGCAATACGTGA
>probe:Drosophila_2:1641226_a_at:338:565; Interrogation_Position=12360; Antisense; GGCAATACGTGAATTTTAACCGCAA
>probe:Drosophila_2:1641226_a_at:579:151; Interrogation_Position=12450; Antisense; ACATGTTTGAAACTGGTGCCCAGGC
>probe:Drosophila_2:1641226_a_at:546:505; Interrogation_Position=12465; Antisense; GTGCCCAGGCAACTGGGTCCAATAT
>probe:Drosophila_2:1641226_a_at:434:91; Interrogation_Position=12536; Antisense; AGTTAGTGGTAGCTTTTTGTGTGTT
>probe:Drosophila_2:1641226_a_at:64:277; Interrogation_Position=12548; Antisense; CTTTTTGTGTGTTGAGCTATAGGGA
>probe:Drosophila_2:1641226_a_at:641:217; Interrogation_Position=12585; Antisense; AAGTAAATCTTCTACACACACACAC
>probe:Drosophila_2:1641226_a_at:122:23; Interrogation_Position=12614; Antisense; ATATATACAAGCACTAACCCCTCTC
>probe:Drosophila_2:1641226_a_at:687:671; Interrogation_Position=12690; Antisense; TTACGTTAGGATAAAAGTCAGTCTT
>probe:Drosophila_2:1641226_a_at:624:161; Interrogation_Position=12729; Antisense; AAATTGAAATGTTTAGCGCCAGCTA
>probe:Drosophila_2:1641226_a_at:456:673; Interrogation_Position=12742; Antisense; TAGCGCCAGCTAAAGTTAAAATACA

Paste this into a BLAST search page for me
AACTAACAGCAACAGCTAGATGGAAGATGGAAAATTGCTACATGGCTTTGGCTACATGGCTTTGTTCTTTAGTTTATTTAACTTCGCAGGCAATACGTGAGGCAATACGTGAATTTTAACCGCAAACATGTTTGAAACTGGTGCCCAGGCGTGCCCAGGCAACTGGGTCCAATATAGTTAGTGGTAGCTTTTTGTGTGTTCTTTTTGTGTGTTGAGCTATAGGGAAAGTAAATCTTCTACACACACACACATATATACAAGCACTAACCCCTCTCTTACGTTAGGATAAAAGTCAGTCTTAAATTGAAATGTTTAGCGCCAGCTATAGCGCCAGCTAAAGTTAAAATACA

Full Affymetrix probeset data:

Annotations for 1641226_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720