FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1641286_s_at:

>probe:Drosophila_2:1641286_s_at:722:595; Interrogation_Position=1793; Antisense; TGTCGTCACCGAGATCCCCAAGGAG
>probe:Drosophila_2:1641286_s_at:207:443; Interrogation_Position=1889; Antisense; GATGTAAGCGACTGCCACTGACTGG
>probe:Drosophila_2:1641286_s_at:597:259; Interrogation_Position=1904; Antisense; CACTGACTGGTCGACAGCCGGAGAG
>probe:Drosophila_2:1641286_s_at:598:535; Interrogation_Position=2001; Antisense; GGTCGGCGGCGAAAGCAGCTCATCA
>probe:Drosophila_2:1641286_s_at:221:353; Interrogation_Position=2015; Antisense; GCAGCTCATCAGTTATCAGTCATCA
>probe:Drosophila_2:1641286_s_at:649:35; Interrogation_Position=2029; Antisense; ATCAGTCATCAGCAGTCGGAGCGAG
>probe:Drosophila_2:1641286_s_at:502:417; Interrogation_Position=2047; Antisense; GAGCGAGACCCACCAATATCTCTTA
>probe:Drosophila_2:1641286_s_at:354:23; Interrogation_Position=2062; Antisense; ATATCTCTTACATCGGTGCATCCAG
>probe:Drosophila_2:1641286_s_at:473:399; Interrogation_Position=2111; Antisense; GACACGCATTCTAATCCTTGATGGA
>probe:Drosophila_2:1641286_s_at:216:441; Interrogation_Position=2130; Antisense; GATGGAACTTTGTTTTGCTTCGCAT
>probe:Drosophila_2:1641286_s_at:540:619; Interrogation_Position=2145; Antisense; TGCTTCGCATTTATCCTTTGGCAAG
>probe:Drosophila_2:1641286_s_at:409:213; Interrogation_Position=2167; Antisense; AAGAGCAGCGCAACATCAGCACACA
>probe:Drosophila_2:1641286_s_at:645:159; Interrogation_Position=2200; Antisense; ACAACCGGCTGGGTGTGAGCTCGTC
>probe:Drosophila_2:1641286_s_at:429:609; Interrogation_Position=2215; Antisense; TGAGCTCGTCGAGACTGCAGCGTTC

Paste this into a BLAST search page for me
TGTCGTCACCGAGATCCCCAAGGAGGATGTAAGCGACTGCCACTGACTGGCACTGACTGGTCGACAGCCGGAGAGGGTCGGCGGCGAAAGCAGCTCATCAGCAGCTCATCAGTTATCAGTCATCAATCAGTCATCAGCAGTCGGAGCGAGGAGCGAGACCCACCAATATCTCTTAATATCTCTTACATCGGTGCATCCAGGACACGCATTCTAATCCTTGATGGAGATGGAACTTTGTTTTGCTTCGCATTGCTTCGCATTTATCCTTTGGCAAGAAGAGCAGCGCAACATCAGCACACAACAACCGGCTGGGTGTGAGCTCGTCTGAGCTCGTCGAGACTGCAGCGTTC

Full Affymetrix probeset data:

Annotations for 1641286_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720