FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1641370_s_at:

>probe:Drosophila_2:1641370_s_at:531:663; Interrogation_Position=1740; Antisense; TAAAGAAGCTGGAGGCCGTGCCCTT
>probe:Drosophila_2:1641370_s_at:6:711; Interrogation_Position=1769; Antisense; TTCACCCTCATCTTCGGCAAGGGAA
>probe:Drosophila_2:1641370_s_at:663:317; Interrogation_Position=1802; Antisense; GCCGGGCATGGCTCTTACAAGGATG
>probe:Drosophila_2:1641370_s_at:552:725; Interrogation_Position=1833; Antisense; TTGACGGCAGCATGGAGGACTTTAA
>probe:Drosophila_2:1641370_s_at:666:91; Interrogation_Position=1857; Antisense; AGTTTGTGGCCTACTTCATCAACGA
>probe:Drosophila_2:1641370_s_at:11:119; Interrogation_Position=1944; Antisense; AGCTAATCTCGCAGGGCAAGTGCCT
>probe:Drosophila_2:1641370_s_at:294:361; Interrogation_Position=1959; Antisense; GCAAGTGCCTCGGTCGTGGCCAGAT
>probe:Drosophila_2:1641370_s_at:1:579; Interrogation_Position=1993; Antisense; GGCCACCCGTGAGGACTGGACAAAG
>probe:Drosophila_2:1641370_s_at:193:559; Interrogation_Position=2010; Antisense; GGACAAAGAAGCTTGGCCAGCCGTT
>probe:Drosophila_2:1641370_s_at:661:291; Interrogation_Position=2031; Antisense; CGTTGCCCCAAGTTCGCTAAATAAT
>probe:Drosophila_2:1641370_s_at:379:513; Interrogation_Position=2065; Antisense; GTGTATTACCGCTGAGATTTGTTGT
>probe:Drosophila_2:1641370_s_at:649:529; Interrogation_Position=2123; Antisense; GGGTACTCGTATGCAAAACTCTATA
>probe:Drosophila_2:1641370_s_at:536:93; Interrogation_Position=2242; Antisense; AGATGTAAGCGTTTCATTCCCTTGC
>probe:Drosophila_2:1641370_s_at:529:1; Interrogation_Position=2257; Antisense; ATTCCCTTGCCACACAATGGCGTAT

Paste this into a BLAST search page for me
TAAAGAAGCTGGAGGCCGTGCCCTTTTCACCCTCATCTTCGGCAAGGGAAGCCGGGCATGGCTCTTACAAGGATGTTGACGGCAGCATGGAGGACTTTAAAGTTTGTGGCCTACTTCATCAACGAAGCTAATCTCGCAGGGCAAGTGCCTGCAAGTGCCTCGGTCGTGGCCAGATGGCCACCCGTGAGGACTGGACAAAGGGACAAAGAAGCTTGGCCAGCCGTTCGTTGCCCCAAGTTCGCTAAATAATGTGTATTACCGCTGAGATTTGTTGTGGGTACTCGTATGCAAAACTCTATAAGATGTAAGCGTTTCATTCCCTTGCATTCCCTTGCCACACAATGGCGTAT

Full Affymetrix probeset data:

Annotations for 1641370_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720