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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1641381_s_at:

>probe:Drosophila_2:1641381_s_at:512:345; Interrogation_Position=2499; Antisense; GCATAGTATTCTCTGCACAGCGGCA
>probe:Drosophila_2:1641381_s_at:435:427; Interrogation_Position=2529; Antisense; GAGTTCCTCCCTTTTCTGGAGGTGC
>probe:Drosophila_2:1641381_s_at:541:435; Interrogation_Position=2547; Antisense; GAGGTGCCCGCATTAGATGCTGTGC
>probe:Drosophila_2:1641381_s_at:248:333; Interrogation_Position=2565; Antisense; GCTGTGCGAATAAGCAACCTTTTGT
>probe:Drosophila_2:1641381_s_at:614:93; Interrogation_Position=2614; Antisense; AGTTGATTCGAATTTTTTGCAGCGC
>probe:Drosophila_2:1641381_s_at:330:353; Interrogation_Position=2632; Antisense; GCAGCGCGAAAATCATTTCCTTTTG
>probe:Drosophila_2:1641381_s_at:516:693; Interrogation_Position=2647; Antisense; TTTCCTTTTGAAGACAACCGTTGCA
>probe:Drosophila_2:1641381_s_at:330:461; Interrogation_Position=2730; Antisense; GATTTATTGATAGTTAAGTCCGACC
>probe:Drosophila_2:1641381_s_at:450:217; Interrogation_Position=2745; Antisense; AAGTCCGACCATTGAGCGTTTGTAA
>probe:Drosophila_2:1641381_s_at:511:485; Interrogation_Position=2844; Antisense; GTAGTCGTCAATTCAAAGTCGCCAA
>probe:Drosophila_2:1641381_s_at:585:369; Interrogation_Position=2899; Antisense; GAATGTACATATTGGCGTTTCCGAT
>probe:Drosophila_2:1641381_s_at:551:575; Interrogation_Position=2912; Antisense; GGCGTTTCCGATTAGATGTTTTTAT
>probe:Drosophila_2:1641381_s_at:191:493; Interrogation_Position=2962; Antisense; GTAACGCATATACCACACATACATA
>probe:Drosophila_2:1641381_s_at:715:703; Interrogation_Position=3018; Antisense; TTACTAGCAGTTAAGAGACGGCAAT

Paste this into a BLAST search page for me
GCATAGTATTCTCTGCACAGCGGCAGAGTTCCTCCCTTTTCTGGAGGTGCGAGGTGCCCGCATTAGATGCTGTGCGCTGTGCGAATAAGCAACCTTTTGTAGTTGATTCGAATTTTTTGCAGCGCGCAGCGCGAAAATCATTTCCTTTTGTTTCCTTTTGAAGACAACCGTTGCAGATTTATTGATAGTTAAGTCCGACCAAGTCCGACCATTGAGCGTTTGTAAGTAGTCGTCAATTCAAAGTCGCCAAGAATGTACATATTGGCGTTTCCGATGGCGTTTCCGATTAGATGTTTTTATGTAACGCATATACCACACATACATATTACTAGCAGTTAAGAGACGGCAAT

Full Affymetrix probeset data:

Annotations for 1641381_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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