Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1641413_s_at:

>probe:Drosophila_2:1641413_s_at:80:279; Interrogation_Position=1484; Antisense; CTACGTCTACAGCTACTACAATGTG
>probe:Drosophila_2:1641413_s_at:101:305; Interrogation_Position=1548; Antisense; CCGAGCAATCTCGAGCTATGCAGAA
>probe:Drosophila_2:1641413_s_at:248:273; Interrogation_Position=1608; Antisense; CATTTGCTGCTATATGGCACTCAAA
>probe:Drosophila_2:1641413_s_at:689:679; Interrogation_Position=1639; Antisense; TAGGCGCTTCTATCTGTAATGTTTA
>probe:Drosophila_2:1641413_s_at:47:479; Interrogation_Position=1659; Antisense; GTTTATGCTTAGAACCTAGTGACTA
>probe:Drosophila_2:1641413_s_at:562:675; Interrogation_Position=1691; Antisense; TAGCTTTAAGTTGCGCATACGCACC
>probe:Drosophila_2:1641413_s_at:227:29; Interrogation_Position=1707; Antisense; ATACGCACCAAGTTAACTGCCCGCA
>probe:Drosophila_2:1641413_s_at:58:309; Interrogation_Position=1761; Antisense; CCACTAACTGGTCTCGAAGCAACAC
>probe:Drosophila_2:1641413_s_at:608:365; Interrogation_Position=1817; Antisense; GAATACTGCCACACCAATCAGAGGA
>probe:Drosophila_2:1641413_s_at:446:371; Interrogation_Position=1846; Antisense; GAAGGACACGAACATCCAGCACCCT
>probe:Drosophila_2:1641413_s_at:109:113; Interrogation_Position=1863; Antisense; AGCACCCTTGTAGCGCATGTGATTG
>probe:Drosophila_2:1641413_s_at:484:655; Interrogation_Position=1901; Antisense; TAAGGACGCGGAGCTAGATTCGATC
>probe:Drosophila_2:1641413_s_at:321:715; Interrogation_Position=1919; Antisense; TTCGATCGGCGAGAGTCTGTAGGAT
>probe:Drosophila_2:1641413_s_at:698:487; Interrogation_Position=1946; Antisense; GTACGAGTGCGAACTCATCGTGTAT

Paste this into a BLAST search page for me
CTACGTCTACAGCTACTACAATGTGCCGAGCAATCTCGAGCTATGCAGAACATTTGCTGCTATATGGCACTCAAATAGGCGCTTCTATCTGTAATGTTTAGTTTATGCTTAGAACCTAGTGACTATAGCTTTAAGTTGCGCATACGCACCATACGCACCAAGTTAACTGCCCGCACCACTAACTGGTCTCGAAGCAACACGAATACTGCCACACCAATCAGAGGAGAAGGACACGAACATCCAGCACCCTAGCACCCTTGTAGCGCATGTGATTGTAAGGACGCGGAGCTAGATTCGATCTTCGATCGGCGAGAGTCTGTAGGATGTACGAGTGCGAACTCATCGTGTAT

Full Affymetrix probeset data:

Annotations for 1641413_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime